Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00515 ATGCCAGACCTCATCAGCCACACATCTGTGGGAGTGGCTAGTTTTTTCAGTGGGACTAAAGAAGGTGATATACGGTGCTTCCATGCTAGTCCGGAAGTTTGGGCAAGAAGAGGTGATGAGGCATTTGGGTTGAAGGCCCCAAAGAAGGAGAAGTATGTAAGAAAGGAAGGTAGGAACCAGCCACCTGTTGAAGCTCGATATGTCCCTCGTAATGTCAAAGCACCCAAATCTAATCCTGATAAAACAGTAGAAGTATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGTACTGGAAAATCAGTATCTTCTTTGCAGGATATCCTCACAAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAACCTCTCAGCATGGATACTGCAGAGCTTGCTGCAATGGAAGTTGGGGTCAACGTTAAGAGGTTACATTCAGCTGAGGGTACTGAAATTGTACCACGCCCTCCAGTTGTAACAGTGATGGGCCATGTTGATCATGGTAAAACTTCTCTTCTCGATGCCTTGCGACAAACATCAGTGGCAGCCAGAGAGGCTGGTGGCATAACTCAACATCTTGGTGCTTTTGTGGTGGTCATGCCATCTGGAGCATCAATCACATTCCTTGACACCCCTGGTCATGCTGCATTTAGTGCAATGCGAGCAAGAGGTGCAGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGATGGAGTGATGCCCCAAACACTCGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCAATTGTTGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAGAAAGTAAAACTGCAGCTTGCTTCAGAGGGCTTGATGTTGGAGGAGATGGGTGGTGACATTCAGGTCATTGAAGTTTCAGCACTTCAAAAAACTGGACTGGATAACCTAGAGGAAGCTTTACTCCTTCAAGCCGAAATGATGGATCTGAAGGCACGAATTGATGGGCCTGCTCAAGCTTATGTGGTAGAAGCAAGGCTTGACAAAGGGCGCGGTCCATTGATAACTACCATAGTTAAAGCAGGGACCTTAACTTGTGGTCAGTATGTGGTTGTAGGCTCAGAGTGGGGAAGAATAAGAGCTATTAAAGACATGGTGGGAAGGTTAACTCAACGAGCAACACCTGCAATGCCTGTTGAAATTGAAGGGCTTCGAGGGTTGCCAATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCCAGAATGCTTAGTTCTGGTAGGACAAGGAAATCTGAGGAGGATAGACTTAGGAGGAAGTTGAATGAGGGCATCCCATCTACGTTGGAGTCATCAGAGGAGGTTCCGCAGAGGGTTGAGATGCCAATAATAGTAAAGGCAGATGTTCAGGGAACTGTTCAAGCTGTCACAGATGCATTGAGAACTTTAAATAGTTCTCAGGTTCTGGTGAATGTTGTTCATGTTGGTGTTGGGCCCATCTCTCAATCTGATGTGGACTTAGCACAAGCTTGTGGTGCGTGCATAGTCGGATTCAATATCAAGAGTCCACCCACTGCTCTTAGTCAGGCAGCAACTCGTGCCAGTATCAAGTTGATTCTGCACCGTGTTATTTACCACCTTTTGGAGGACATAGGAAATTTGATAGTAGAGAAGGCCCCTGGTACTTTTGAGACCCAGGTAGCTGGGCAGGCAGAGGTGCTGAACATCTTTGAAGTGAAAGGGAGCAAGTCAAAGGGACCTGATGTTAAGATAGCCGGTTGTCGGGTTGTCGAAGGTTTTGTGGTGAGGACAGGAACCATGAGGCTCCTGAGAAGCGGGGAAGTGGTGTTCGAAGGAAATTGTGCATCTCTTAAGCGGGAGAAGCAGGATGTGGATACTGTGAAGAAGGGTAATGAGTGTGGATTAGTTATCAGTGATTGGTATGATTTCCAGATTGGAGATGTTATTCAGTGCTTGGAACAGGTCGTCAGGAAGCCCAAGTTCATTAAGTCAGAGAGTGGTGCTGTTCGAATTGAGTGCTGA 2022 0.4629 MPDLISHTSVGVASFFSGTKEGDIRCFHASPEVWARRGDEAFGLKAPKKEKYVRKEGRNQPPVEARYVPRNVKAPKSNPDKTVEVFEGMTLVELAKRTGKSVSSLQDILTNVGEKVESEFEPLSMDTAELAAMEVGVNVKRLHSAEGTEIVPRPPVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPEKVKLQLASEGLMLEEMGGDIQVIEVSALQKTGLDNLEEALLLQAEMMDLKARIDGPAQAYVVEARLDKGRGPLITTIVKAGTLTCGQYVVVGSEWGRIRAIKDMVGRLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRTRKSEEDRLRRKLNEGIPSTLESSEEVPQRVEMPIIVKADVQGTVQAVTDALRTLNSSQVLVNVVHVGVGPISQSDVDLAQACGACIVGFNIKSPPTALSQAATRASIKLILHRVIYHLLEDIGNLIVEKAPGTFETQVAGQAEVLNIFEVKGSKSKGPDVKIAGCRVVEGFVVRTGTMRLLRSGEVVFEGNCASLKREKQDVDTVKKGNECGLVISDWYDFQIGDVIQCLEQVVRKPKFIKSESGAVRIEC 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00515 673 Hamap Translation initiation factor IF-2 [infB]. 2 659 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Adu06g00515 673 Gene3D Translation factors 556 658 - -
Adu06g00515 673 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 25 664 IPR015760 -
Adu06g00515 673 PANTHER TRANSLATION INITIATION FACTOR IF-2, MITOCHONDRIAL 25 664 - -
Adu06g00515 673 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 449 562 IPR036925 -
Adu06g00515 673 SUPERFAMILY Translation proteins 326 408 IPR009000 -
Adu06g00515 673 Gene3D Translation factors 325 438 - -
Adu06g00515 673 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 322 IPR027417 -
Adu06g00515 673 CDD mtIF2_IVc 562 651 - -
Adu06g00515 673 TIGRFAM small_GTP: small GTP-binding protein domain 155 308 IPR005225 GO:0005525
Adu06g00515 673 CDD IF2_eIF5B 155 319 - -
Adu06g00515 673 Pfam Elongation factor Tu GTP binding domain 157 313 IPR000795 GO:0003924|GO:0005525
Adu06g00515 673 Gene3D - 450 554 IPR036925 -
Adu06g00515 673 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 152 322 IPR000795 GO:0003924|GO:0005525
Adu06g00515 673 Pfam Translation-initiation factor 2 445 544 IPR023115 -
Adu06g00515 673 TIGRFAM IF-2: translation initiation factor IF-2 81 656 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Adu06g00515 673 Gene3D - 149 324 IPR027417 -
Adu06g00515 673 CDD IF2_mtIF2_II 328 421 IPR044145 -
Adu06g00515 673 SUPERFAMILY Translation proteins 557 658 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00515 Adu-Chr6 6079886 6083816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00515 143 637 Eukaryotic Initiation Factors Gene Family AT1G76810 27.128 1.51e-30 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00515 K02519 - gmx:100790572 1074.69