Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00509 ATGGGAAGGCACTCTTGCTGCTACAAGCAGAAGCTTCGCAAGGGCCTTTGGTCTCCCGAGGAAGACGAGAAGCTCTTGAATTACATCACTAAGCATGGCCATGGATGTTGGAGCTCTGTCCCCAAACTAGCAGGAGCATTCTCCGAGCAGGAAGAGAAGTTGATAATTGAGCTGCATGCACTTCTTGGTAACAGGTGGTCACAGATTGCTGCACAGTTACCTGGCAGAACTGACAATGAGATCAAGAATCTTTGGAATTCCTGCCTCAAGAAGAAGCTCAGGCAAAGAGGGATTGACCCTAACACTCACCAACCTCTCTCTTCATCCAACAACAACGACAACAACAACCACCATCAACCACCAACCACCACCACTGACCACCCAAATTCATCATCCATCGACAACAAGGAATCATCATCAACACTCTTCCTAGATACACCTACTACTACTACTACTACTACTTCTTCTCATGATATCGTGGGCTACCTCTCCTTCACCAACAACAACTATGGAACAACACCAACCTCTCTTTGTACTTCTTCATCTTCAGACCTCAATTCCGCTATGTTCACTTCACTTTTCCCACCACAGATCATCAAGCCTACTGCTACCACCACTGAACCCCTCAATTGGGAAAGCAGCAGCTTCATTGATAGCACCAGCACCATAGCTTGGGGGCAAGAATCCACTGCTCTAGAGGCGGCACAAAAAGTAGATGACATAAATAAGTGGTCTGAATATCTTAACAGCAACATCAACCCCTTCTTCCTCGCCAACAACAACAACACAATCACACTGCCTTCTCCTTCTATCTACACCACCAACGACGACATCGTCAAACCAGAAACTTTCATAAATGTAGATGAATCCAGTACCATCGCCTCCTGGCACCAAACCACCACCAGTAACGCCTCAACCCACCACCAACACCAACCACCTTTTCAGCAGCCCTCAGATTTATACACCAAAGATCTCCACACTAGATTTTCACTGGCCTTTGGACAAACCATGTAA 1014 0.4655 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGAFSEQEEKLIIELHALLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHQPLSSSNNNDNNNHHQPPTTTTDHPNSSSIDNKESSSTLFLDTPTTTTTTTSSHDIVGYLSFTNNNYGTTPTSLCTSSSSDLNSAMFTSLFPPQIIKPTATTTEPLNWESSSFIDSTSTIAWGQESTALEAAQKVDDINKWSEYLNSNINPFFLANNNNTITLPSPSIYTTNDDIVKPETFINVDESSTIASWHQTTTSNASTHHQHQPPFQQPSDLYTKDLHTRFSLAFGQTM 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00509 337 SMART sant 46 91 IPR001005 -
Adu06g00509 337 SMART sant 13 45 IPR001005 -
Adu06g00509 337 PANTHER MYB DOMAIN PROTEIN 55 45 191 - -
Adu06g00509 337 ProSiteProfiles Myb-like domain profile. 9 89 IPR001005 -
Adu06g00509 337 SUPERFAMILY Homeodomain-like 12 85 IPR009057 -
Adu06g00509 337 PANTHER MYB DOMAIN PROTEIN 55 124 329 - -
Adu06g00509 337 Gene3D - 11 45 - -
Adu06g00509 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 43 IPR017930 -
Adu06g00509 337 PANTHER HOMEODOMAIN-RELATED 1 45 - -
Adu06g00509 337 CDD SANT 46 86 IPR001005 -
Adu06g00509 337 Pfam Myb-like DNA-binding domain 45 88 IPR001005 -
Adu06g00509 337 PANTHER MYB DOMAIN PROTEIN 55 1 45 - -
Adu06g00509 337 PANTHER HOMEODOMAIN-RELATED 124 329 - -
Adu06g00509 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 93 IPR017930 -
Adu06g00509 337 Gene3D - 46 123 - -
Adu06g00509 337 MobiDBLite consensus disorder prediction 299 319 - -
Adu06g00509 337 MobiDBLite consensus disorder prediction 100 155 - -
Adu06g00509 337 MobiDBLite consensus disorder prediction 97 155 - -
Adu06g00509 337 PANTHER HOMEODOMAIN-RELATED 45 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00509 Adu-Chr6 5996976 5998071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00509 1 337 MYB Transcription Factor Family AT1G09540 38.725 2.60e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu06g00509 Myb_DNA-binding 4.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00509 K09422 - gmx:100790184 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g00509 06 5996976 5998071 Adu09g01089 09 20944798 20946427 PCT