LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu06g00507	ATGATGCCTTTGCATGAGTTGTACCGCAAGGCCAAGGAGAAGCTTGATTGTTCTAAAGAGATCAATAGCACAAGTGCAACTGATCATTCAACCGCACCAGAGAGTGATTTCTATGAACTTGTTTGGGAAAATGGTCAGATTTCAATGCAGGGTCAGTCAAGTAGTAGAGGTAGAAAGAGTCCAACTTGTAAGAGTTTAACATCTCATTGTCCCAAGGGTCTTCAACATAGGGATGTAGTGGGATATGGTAATGGTACCAATAATGTTAATATGATGAGGATGGGGAAGTTTGGGGATTCAGAAAGTGGACTGAATGAGATTAGAATGCCGGCTCCATCTGCTGAAGACGAAGACGTGATACATTGGTTGAATTATGGAATGGATGAATCTTTGCCACATGACTATGGTTCTGATTTCATACATGAACTCTCTGGGGTCACCATGCATGAAATCCCTCCCTTAAATAACCTCTCTTTGTTGGACAAAAGAAGCAATTCCAATCAGTTACTTAGGGACTCTCACAAGAACTATGCACGCCATGCTTTTGGTTCAGAACAAGGGATCCTTAACAAGGACTTTTCGGTTATGGCTAAAGGAGAGATTGAGATCCCTAGACCCAAACCTAGTACAAGTCAATTTTGCCAACCATCATCATATCAATGTCAAGGATCATTTGCATCTGTTAGGTCCAAAGCATCAGAGATAACAGAGAATAATGGTAGTAACCCTACTCATCAAGTACCTTGTGGGGAACTGGCTCAGATTTTCCCATCTGCTTCAAGTGGTTTTTCTGGGTTAAAGTTGGATAAGCAAGATCAGGTTATGTGCAGCAGTAGTTCCACTATAATGAACTTCTCCCATTTCGCTAGACCTGCTGCTATTGTGAAGGCTAATCTTCAGAACATTGGGTTGTCTTCATCAAGATCAGATGGTATTGAAAACAAAAATAACGATGCTTCTGCGACCGCAAGCAATCCTCCTGAATTAACAAAAGCTGGTTTTAGTGGCGAACATCCGAAACAATCCGCTGTGCACGAGCTGAAGATTGTGGAGCCTTCTAAGGCTGATTTGAAGCAATTGGAGCCCTCTAAGGCTGATTTGAAGCAATTGGAGCCAAAATCTCTTGAAGTGAATGCTACTGTTTTGAGGCAATCTGATCCTGCTCGAAAAGAAGATGTGTCAAAGATTTATCAAAGTTCCAATCTACTTCTTTGTGAAAGTACCAATAAAGGAGAGGAAGCTGTTGTAAAAAATATGGAGCCTGCAGTAGCCTCTTCATCCATTTGCTCTGGCAATGGCGCAGAGAGAATTTCGGGCAACCCAAACCAAAGTTTGAAGCGAAAAAGACAAGAAACAGAGGACTCTGAGTGCCACAGTGAAGATGTTGAGGAAGAATCAGTGGGTGTTAAAAAGGCAGGTCCAACACGAGGTGTTAAGAGAAGTCGTTCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTGCAAGATCTCATACCAAACTGCAATAAGGTGGACAAAGCTTCAATGCTGGACGAGGCAATCGAGTATCTCAAAACACTTCAACTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTGTATATGCCTCCGAATGGGTATGCCTGA	1659	0.4231	MMPLHELYRKAKEKLDCSKEINSTSATDHSTAPESDFYELVWENGQISMQGQSSSRGRKSPTCKSLTSHCPKGLQHRDVVGYGNGTNNVNMMRMGKFGDSESGLNEIRMPAPSAEDEDVIHWLNYGMDESLPHDYGSDFIHELSGVTMHEIPPLNNLSLLDKRSNSNQLLRDSHKNYARHAFGSEQGILNKDFSVMAKGEIEIPRPKPSTSQFCQPSSYQCQGSFASVRSKASEITENNGSNPTHQVPCGELAQIFPSASSGFSGLKLDKQDQVMCSSSSTIMNFSHFARPAAIVKANLQNIGLSSSRSDGIENKNNDASATASNPPELTKAGFSGEHPKQSAVHELKIVEPSKADLKQLEPSKADLKQLEPKSLEVNATVLRQSDPARKEDVSKIYQSSNLLLCESTNKGEEAVVKNMEPAVASSSICSGNGAERISGNPNQSLKRKRQETEDSECHSEDVEEESVGVKKAGPTRGVKRSRSAEVHNLSERRRRDRINEKMRALQDLIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPNGYA	552

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Adu06g00507	552	MobiDBLite	consensus disorder prediction	48	69	-	-
Adu06g00507	552	MobiDBLite	consensus disorder prediction	306	342	-	-
Adu06g00507	552	MobiDBLite	consensus disorder prediction	446	470	-	-
Adu06g00507	552	MobiDBLite	consensus disorder prediction	478	492	-	-
Adu06g00507	552	MobiDBLite	consensus disorder prediction	426	492	-	-
Adu06g00507	552	MobiDBLite	consensus disorder prediction	426	445	-	-
Adu06g00507	552	CDD	bHLH_AtPIF_like	482	544	-	-
Adu06g00507	552	Coils	Coil	445	465	-	-
Adu06g00507	552	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	481	541	IPR036638	GO:0046983
Adu06g00507	552	MobiDBLite	consensus disorder prediction	306	329	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu06g00507	Adu-Chr6	5984874	5987327	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu06g00507	2	548	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G09530	33.752	1.25e-59	204

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Adu06g00507		HLH	4e-14	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu06g00507	K12126		-	gmx:100794974	545.814

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