Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00507 ATGATGCCTTTGCATGAGTTGTACCGCAAGGCCAAGGAGAAGCTTGATTGTTCTAAAGAGATCAATAGCACAAGTGCAACTGATCATTCAACCGCACCAGAGAGTGATTTCTATGAACTTGTTTGGGAAAATGGTCAGATTTCAATGCAGGGTCAGTCAAGTAGTAGAGGTAGAAAGAGTCCAACTTGTAAGAGTTTAACATCTCATTGTCCCAAGGGTCTTCAACATAGGGATGTAGTGGGATATGGTAATGGTACCAATAATGTTAATATGATGAGGATGGGGAAGTTTGGGGATTCAGAAAGTGGACTGAATGAGATTAGAATGCCGGCTCCATCTGCTGAAGACGAAGACGTGATACATTGGTTGAATTATGGAATGGATGAATCTTTGCCACATGACTATGGTTCTGATTTCATACATGAACTCTCTGGGGTCACCATGCATGAAATCCCTCCCTTAAATAACCTCTCTTTGTTGGACAAAAGAAGCAATTCCAATCAGTTACTTAGGGACTCTCACAAGAACTATGCACGCCATGCTTTTGGTTCAGAACAAGGGATCCTTAACAAGGACTTTTCGGTTATGGCTAAAGGAGAGATTGAGATCCCTAGACCCAAACCTAGTACAAGTCAATTTTGCCAACCATCATCATATCAATGTCAAGGATCATTTGCATCTGTTAGGTCCAAAGCATCAGAGATAACAGAGAATAATGGTAGTAACCCTACTCATCAAGTACCTTGTGGGGAACTGGCTCAGATTTTCCCATCTGCTTCAAGTGGTTTTTCTGGGTTAAAGTTGGATAAGCAAGATCAGGTTATGTGCAGCAGTAGTTCCACTATAATGAACTTCTCCCATTTCGCTAGACCTGCTGCTATTGTGAAGGCTAATCTTCAGAACATTGGGTTGTCTTCATCAAGATCAGATGGTATTGAAAACAAAAATAACGATGCTTCTGCGACCGCAAGCAATCCTCCTGAATTAACAAAAGCTGGTTTTAGTGGCGAACATCCGAAACAATCCGCTGTGCACGAGCTGAAGATTGTGGAGCCTTCTAAGGCTGATTTGAAGCAATTGGAGCCCTCTAAGGCTGATTTGAAGCAATTGGAGCCAAAATCTCTTGAAGTGAATGCTACTGTTTTGAGGCAATCTGATCCTGCTCGAAAAGAAGATGTGTCAAAGATTTATCAAAGTTCCAATCTACTTCTTTGTGAAAGTACCAATAAAGGAGAGGAAGCTGTTGTAAAAAATATGGAGCCTGCAGTAGCCTCTTCATCCATTTGCTCTGGCAATGGCGCAGAGAGAATTTCGGGCAACCCAAACCAAAGTTTGAAGCGAAAAAGACAAGAAACAGAGGACTCTGAGTGCCACAGTGAAGATGTTGAGGAAGAATCAGTGGGTGTTAAAAAGGCAGGTCCAACACGAGGTGTTAAGAGAAGTCGTTCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTGCAAGATCTCATACCAAACTGCAATAAGGTGGACAAAGCTTCAATGCTGGACGAGGCAATCGAGTATCTCAAAACACTTCAACTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTGTATATGCCTCCGAATGGGTATGCCTGA 1659 0.4231 MMPLHELYRKAKEKLDCSKEINSTSATDHSTAPESDFYELVWENGQISMQGQSSSRGRKSPTCKSLTSHCPKGLQHRDVVGYGNGTNNVNMMRMGKFGDSESGLNEIRMPAPSAEDEDVIHWLNYGMDESLPHDYGSDFIHELSGVTMHEIPPLNNLSLLDKRSNSNQLLRDSHKNYARHAFGSEQGILNKDFSVMAKGEIEIPRPKPSTSQFCQPSSYQCQGSFASVRSKASEITENNGSNPTHQVPCGELAQIFPSASSGFSGLKLDKQDQVMCSSSSTIMNFSHFARPAAIVKANLQNIGLSSSRSDGIENKNNDASATASNPPELTKAGFSGEHPKQSAVHELKIVEPSKADLKQLEPSKADLKQLEPKSLEVNATVLRQSDPARKEDVSKIYQSSNLLLCESTNKGEEAVVKNMEPAVASSSICSGNGAERISGNPNQSLKRKRQETEDSECHSEDVEEESVGVKKAGPTRGVKRSRSAEVHNLSERRRRDRINEKMRALQDLIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPNGYA 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00507 552 MobiDBLite consensus disorder prediction 48 69 - -
Adu06g00507 552 MobiDBLite consensus disorder prediction 306 342 - -
Adu06g00507 552 MobiDBLite consensus disorder prediction 446 470 - -
Adu06g00507 552 MobiDBLite consensus disorder prediction 478 492 - -
Adu06g00507 552 MobiDBLite consensus disorder prediction 426 492 - -
Adu06g00507 552 MobiDBLite consensus disorder prediction 426 445 - -
Adu06g00507 552 CDD bHLH_AtPIF_like 482 544 - -
Adu06g00507 552 Coils Coil 445 465 - -
Adu06g00507 552 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 481 541 IPR036638 GO:0046983
Adu06g00507 552 MobiDBLite consensus disorder prediction 306 329 - -
Adu06g00507 552 Gene3D - 478 540 IPR036638 GO:0046983
Adu06g00507 552 PANTHER TRANSCRIPTION FACTOR PIF3 2 548 - -
Adu06g00507 552 MobiDBLite consensus disorder prediction 48 70 - -
Adu06g00507 552 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 482 531 IPR011598 GO:0046983
Adu06g00507 552 PANTHER TRANSCRIPTION FACTOR PIF3 2 548 IPR044273 GO:0003700|GO:0006355
Adu06g00507 552 SMART finulus 488 537 IPR011598 GO:0046983
Adu06g00507 552 Pfam Helix-loop-helix DNA-binding domain 486 532 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00507 Adu-Chr6 5984874 5987327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00507 2 548 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 33.752 1.25e-59 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu06g00507 HLH 4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00507 K12126 - gmx:100794974 545.814