Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00454 ATGGTAAGGGGAGGAAAAATTAGTGGCAAAAGCAGCTTTAGGAATAGGGCTCGGTCAAAGGAAGGTGGTTCCGATGATTCCGATGAAGATTATGTGGTTTCAGATGAAGATGAAGAAGTGTCCGATTGTCCGGACGAATATAGCTCCTCTCTAGATGGATGTGCAACAGAGGAGAGTTATGATGCTTTTATAGACGAGGAGGAAGAAGATGATGGAATTCAACAAGTGAAGAAATTCAATAGATCAGAGGCCAGGAATGGTGTTTGTGGCCGACAGAAAAATGCAAGTAAAAGCAGACGAAAGAGGGGAAGGATTGCATATGCAAAACATGAAGATCAAGAAGCACAAGAAGAACAAGAACAAGAACAAGTAAAAGTAGAAGATGGGGATGGGGATGGGGATGGAGATGGAGATGGATGTGGAGGTGGAAGTAGGGAGAAGGAGGGTGAGGATGATGAGGATGAAGATGAGGATTTCAAATATGATGATTATGAGGAGGACAATGGCGATGACGACGACGATGAGGACTTTGATTTTGAAGATGATGATGAGGAATTTTCACTAGAGGAAGGAGATTACTTAGTAGAGGAAGAAGAATCAAGGGGAAGAAAGAAGAAAAATAACAACATGAAAGTGCGCAAGAAGATTTTGAAGAGAAAGGTTTCCGTGACTTCTACCAAACATCGAAAGAGGAAGAAATCTAGAGCTTCAAATAAACCCTTGAAAAAGAAAAGAAGGAATAGAGGGTTAAAGAGGAAAGTAAGATGTGATGATGTGGATGATTTTATTGATAATGGCCCAGCCAGCAGGACAAAAAGGAGGAAAGAATTGGGTAGGCCAAGGAGAATGCTTTTACCCGAGGATTCCAATTCCGATGCATATGGTGCCTCTTCTGGTTCATCTGATTTCGAGTTTACTATCTCCGAAGAAGAAAGAGAACAGGTCCGAGAAGCCCAAGAATTGTGTCAAAGCTCTAGAAGGAATTTGAGGAGTTCTTCCCATTTAACCAAAAATGAAGAGATTGAGTTACATGAAGATCGACACCAACTAAGGAAGCCTCATGGTCGAAAGGGTAAGGAAAAGATAGATGAATCTCAAGGAAGAAAGGGTAAGGAAAAGGTAGAGGATTTAAAAAATGAGTTGGGAAAGCAGGTGTGCGGAATTTGTTTGTCTGAGGAAAATAAAAGAAAAATAAGAGGAATTCTAAATTGTTGTACTCACTACTTTTGCTTTACCTGCATTGTGGAGTGGGCAAAAGTGGAAACTCGGTGTCCTTTGTGTAAGCAGAGATTCAGAACAATTACTAAGCCTGCCAGATCAACTGCAGGAGTTGATTTTAGAGAAGTGGTAGTAGAAGTGCCTGAACGCGACCAGGTTTACCAGCCCACCGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGGATGTTATTTGTTCAGAGTGCCGTCAAGGTGGAGATGATGCCCTCATGTTACTATGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGTCGGGAAGTACCTGAAGGTAATTGGTATTGTGATGGTTGCAGACCGGATGCTTTGGCATCTTCAAGCTCTCAAGTTCAAGAACGTCTGACTGATCCAAGTGTCCCAACTCAAAACTTGCCTGTTAGACCATCAATTGTTCTTAATGAACGAGAAAGTATAGACCTCAACATGATATCTTCACCCCGGGCATCTTTTAGTCAAGGATTTGGGCATATTTCATCTGCTAGAGTTTCTGGTAGAAGTGTTGAACTAGCTTCTCCAGGACCTGGAGGAGGGGCACCGACTTTATCAGAAAGGCGCTGGATACTCCGACAGATTCACCAGCTACGTTCGGTATCTGGCAGAACCAATGGTACTTCAGCTACCAATTCAACAAGTAACTTGTATAACTCTCAAACCGATCAAGGCAGGGAAACAAATGCAACACAGCATACAAGGGCACAGGATGCGGGAACATCGTACCTCCCATTCTTAGACGAGAGATTATGCAACAATATGTCTCCATCAATGCAGAATGCAGACCCCTCCTCAACGAGAATTGGCAATGCTAGAAGACCAGTGGTTCAGGATTCAGCTATGCTTGCCAACAGATCTATGCACGGTGTGCTATTGCCCGTACTTGTGGCAACAACACCTTCCGTATCTGGTTATGAACAAGTTTATCCGTTCAACAACAGCATAGACGTGGTCACTGACAATAGCTTACCCGTTGCTATCAAAGAAGAGAGTAACTTCGAAACAATAAAGCAGCAGTTGAAGTCTATGGTTAAAAGACACCTGTGGAGCTTATCTCGAGATGTTGATTTAGGGCATAATACTCTCAAGGACGTTGCAAGGAGTTCTAAACACACCGTACTAGCTGCATGTGGTCTTGAGCACAAGAAGAGTGAGGTTCGGTCTGTGCCCGCACCAGATGTCTGCCCCCACATTGAACTAATGGCAGGTGGACAAACTAGTTTGATAAGAGGTTGCTGCTCAACTTGCTTTGATTCTTTTGTAAAAAATGTGGTAAAAAATATTTTGGACAGAAGAATGTCCTCACAGTGGTTACGATTAGGTCTCTAG 2592 0.4282 MVRGGKISGKSSFRNRARSKEGGSDDSDEDYVVSDEDEEVSDCPDEYSSSLDGCATEESYDAFIDEEEEDDGIQQVKKFNRSEARNGVCGRQKNASKSRRKRGRIAYAKHEDQEAQEEQEQEQVKVEDGDGDGDGDGDGCGGGSREKEGEDDEDEDEDFKYDDYEEDNGDDDDDEDFDFEDDDEEFSLEEGDYLVEEEESRGRKKKNNNMKVRKKILKRKVSVTSTKHRKRKKSRASNKPLKKKRRNRGLKRKVRCDDVDDFIDNGPASRTKRRKELGRPRRMLLPEDSNSDAYGASSGSSDFEFTISEEEREQVREAQELCQSSRRNLRSSSHLTKNEEIELHEDRHQLRKPHGRKGKEKIDESQGRKGKEKVEDLKNELGKQVCGICLSEENKRKIRGILNCCTHYFCFTCIVEWAKVETRCPLCKQRFRTITKPARSTAGVDFREVVVEVPERDQVYQPTEEELRSYIDPYEDVICSECRQGGDDALMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPDALASSSSQVQERLTDPSVPTQNLPVRPSIVLNERESIDLNMISSPRASFSQGFGHISSARVSGRSVELASPGPGGGAPTLSERRWILRQIHQLRSVSGRTNGTSATNSTSNLYNSQTDQGRETNATQHTRAQDAGTSYLPFLDERLCNNMSPSMQNADPSSTRIGNARRPVVQDSAMLANRSMHGVLLPVLVATTPSVSGYEQVYPFNNSIDVVTDNSLPVAIKEESNFETIKQQLKSMVKRHLWSLSRDVDLGHNTLKDVARSSKHTVLAACGLEHKKSEVRSVPAPDVCPHIELMAGGQTSLIRGCCSTCFDSFVKNVVKNILDRRMSSQWLRLGL 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00454 863 MobiDBLite consensus disorder prediction 621 658 - -
Adu06g00454 863 PANTHER F18C1.6 PROTEIN 1 851 - -
Adu06g00454 863 CDD RING-HC_Topors 386 428 - -
Adu06g00454 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 543 IPR013083 -
Adu06g00454 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 362 449 IPR013083 -
Adu06g00454 863 MobiDBLite consensus disorder prediction 105 130 - -
Adu06g00454 863 MobiDBLite consensus disorder prediction 1 302 - -
Adu06g00454 863 MobiDBLite consensus disorder prediction 252 273 - -
Adu06g00454 863 ProSiteProfiles Zinc finger PHD-type profile. 476 525 IPR019787 -
Adu06g00454 863 PANTHER F18C1.6 PROTEIN 1 851 - -
Adu06g00454 863 SMART ring_2 386 427 IPR001841 -
Adu06g00454 863 Coils Coil 308 328 - -
Adu06g00454 863 MobiDBLite consensus disorder prediction 321 374 - -
Adu06g00454 863 Pfam PHD-finger 478 524 IPR019787 -
Adu06g00454 863 ProSiteProfiles Zinc finger RING-type profile. 386 428 IPR001841 -
Adu06g00454 863 MobiDBLite consensus disorder prediction 356 374 - -
Adu06g00454 863 SUPERFAMILY RING/U-box 385 434 - -
Adu06g00454 863 MobiDBLite consensus disorder prediction 332 349 - -
Adu06g00454 863 SUPERFAMILY FYVE/PHD zinc finger 449 524 IPR011011 -
Adu06g00454 863 Coils Coil 107 127 - -
Adu06g00454 863 Pfam Ring finger domain 385 428 IPR001841 -
Adu06g00454 863 ProSitePatterns Zinc finger RING-type signature. 405 414 IPR017907 -
Adu06g00454 863 MobiDBLite consensus disorder prediction 206 251 - -
Adu06g00454 863 MobiDBLite consensus disorder prediction 148 195 - -
Adu06g00454 863 MobiDBLite consensus disorder prediction 28 45 - -
Adu06g00454 863 SMART PHD_3 478 523 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00454 Adu-Chr6 5389418 5393093 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00454 473 522 C2H2 Transcription Factor Family AT3G01460 46.154 2.11e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Adu06g00454 PHD 5.5e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00454 - - gmx:100797448 854.744