Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00409 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCCACAGATAACACTAACAGCAGAGTAGAAGGAGGAGGAGGAGGAGATGCATCACTATTGTTACTTAATAAAAATAAACAGCAATCAGAGTCAGAGATACTTGGTGGTGGTGGTGGTGGTAACTTCCATAGTCCAAATTCTCATTCTTCAACCATCACTACTAATAACAGCAGCAGCAATGCTTCCAACGCAAATTCACAACCACAACCACCACCGCCTCCTAAGAAGAAAAGAAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCTCTATCGCCAAACACGCTGGTGACAACAAACCGGTTCATATGTGAGATCTGCAACAAAGGATTCCAAAGGGATCAGAACCTTCAACTTCACCGGAGAGGCCATAACCTGCCATGGAAGCTGAAACAAAGAAGCAGCAACGAAGTGCGGAAAAGGGTGTACGTGTGTCCCGAAGTGTCGTGTGTCCACCACAATCCTGCTCGAGCACTGGGAGACCTCACCGGAATCAAGAAGCACTTCAGCAGAAAGCACGGCGACAAGAAGTGGAAATGTGAGAAATGCAACAAGAAATACGCCGTTCAATCTGACTGGAAAGCTCATTCCAAAATCTGTGGTACCAAAGAATACAAATGTGACTGCGGCACCGTCTTTTCCAGAAGAGATAGCTTCATAACCCACAGAGCTTTCTGTGACGCACTGGCTGATGAGAATAACAAAGTGAACAATGAAGGAGGAGTACTGGGACATTTTCCAAAGATAGGTTCCAACTTATTGCAACCATTAATCCCAAACCTAGTTGCATCATTACCAATTACTCGCAATAACACTAGTATTTCTACTTCCGAATTCAAGCAGCATCCATCATCATTCCCTCATGAACTCATGCCAATTTCAATGCCTGAACAAAAACCCTTCATCAACACCACCACCACCACCAACAACCACCTAATAAACCCTTCATCACTGCCCTCTCTTCAACTGAACTCACCACATTCTCCGCTAAACATGTTCGATGAGAGTGGTGGGGTCCATTTAGCTGCAGGGTTACCTCACATGTCCGCCACGGCATTGCTTCAAAAAGCTGCACAAATGGGTGCAACAAGCGTGAGCAATAATAACAATAACACTAGCATGGCACCCCCGTCATTTGCTTCTTCCAATAATGGGATCATCATGGAACACTTCATGCACAATGCTCATCCTCAACACGATAATATTTCACCGTCTCATCAGTTTAATAATAACAATAATTTCAACGGGAGCGTTGGAATGAACGGTGTGGAAATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTAGCCAAGATCATTGATCAGAACAACAGAAGCAGTGGATTCAGTATCCCACCGGTGAGTGGTAGGAGTAGTAGCACCATTAATATTGGTGGAGCTAAGGGAAGTGACGATGTAATGACTCTGGACTTTCTGGGAATCGGAGCAGGAGGTGCTGGTGGTGGTGGCGGCGGCGGAGATGGTGGTGCCCATGGATACTTTGGTATTGGTCCCTTAGCGTAA 1566 0.4521 MSNITSCDSGSFSTDNTNSRVEGGGGGDASLLLLNKNKQQSESEILGGGGGGNFHSPNSHSSTITTNNSSSNASNANSQPQPPPPPKKKRSLPGNPDPSAEVIALSPNTLVTTNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSNEVRKRVYVCPEVSCVHHNPARALGDLTGIKKHFSRKHGDKKWKCEKCNKKYAVQSDWKAHSKICGTKEYKCDCGTVFSRRDSFITHRAFCDALADENNKVNNEGGVLGHFPKIGSNLLQPLIPNLVASLPITRNNTSISTSEFKQHPSSFPHELMPISMPEQKPFINTTTTTNNHLINPSSLPSLQLNSPHSPLNMFDESGGVHLAAGLPHMSATALLQKAAQMGATSVSNNNNNTSMAPPSFASSNNGIIMEHFMHNAHPQHDNISPSHQFNNNNNFNGSVGMNGVEMFNAILDQSKALAKIIDQNNRSSGFSIPPVSGRSSSTINIGGAKGSDDVMTLDFLGIGAGGAGGGGGGGDGGAHGYFGIGPLA 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00409 521 SUPERFAMILY beta-beta-alpha zinc fingers 115 212 IPR036236 -
Adu06g00409 521 Pfam Zinc-finger double-stranded RNA-binding 116 138 IPR022755 -
Adu06g00409 521 SMART c2h2final6 157 187 IPR013087 -
Adu06g00409 521 SMART c2h2final6 192 212 IPR013087 -
Adu06g00409 521 SMART c2h2final6 116 138 IPR013087 -
Adu06g00409 521 MobiDBLite consensus disorder prediction 1 101 - -
Adu06g00409 521 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 59 497 - -
Adu06g00409 521 MobiDBLite consensus disorder prediction 54 77 - -
Adu06g00409 521 MobiDBLite consensus disorder prediction 1 23 - -
Adu06g00409 521 Gene3D Classic Zinc Finger 171 250 - -
Adu06g00409 521 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Adu06g00409 521 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 59 497 - -
Adu06g00409 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 138 IPR013087 -
Adu06g00409 521 Gene3D Classic Zinc Finger 95 163 - -
Adu06g00409 521 MobiDBLite consensus disorder prediction 78 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00409 Adu-Chr6 4916839 4920261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00409 61 249 IDZ Gene Family AT3G50700 78.307 1.83e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu06g00409 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00409 - - gmx:100813556 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g00409 06 4916839 4920261 Adu09g01288 09 31393052 31398998 ECH
Adu06g00409 06 4916839 4920261 Adu06g00409 06 4916839 4920261 ECH
Adu06g00409 06 4916839 4920261 Adu09g01288 09 31393052 31398998 PCT