LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu06g00400	ATGCAAGATATATTCGGATCAGTTCGGCGATCGCTGGTGTTCCGTGCTTCGCCTGAGAACGAAGAGCACTCGCTGAGAGGAACCCTAGTTGATAAGATCGGTTACTGTATACGCAATTCCAGAGTCTTCTCTAAGCCCTCACTGTCGCCACCGTCCTTGCCGCCGATTCCCAAGGACGTTGCTGCTGCTGCTCCGCCGCCGCCTACGATCCGATGGCGCAAGGGCGAGTTGATCGGTTGCGGCGCATTTGGCCAAGTTTATGTTGGAATGAATCTCGATTCTGGAGAACTTTTAGCAGTTAAACAGGTTTTGATTGCAGCGAGTAGTGCTTCGAAGGAGAAGGCACAGGCTCATGTAAAAGAGCTCGAGGAAGAAGTTAAGCTTCTTAAAGATCTTTCACATCCCAACATTGTTAGATATTTGGGTACAGTTAGAGAGGAGGACACCTTAAATATTCTCCTGGAGTTTGTCCCTGGTGGATCCATATCATCACTGTTGGGGAAATTCGGAGCTTTCCCTGAGGCAGTCATAAGAACTTACACAAAGCAGTTGCTGCTTGGACTTGAGTACTTGCACAAAAATGGAATAATGCACAGAGATATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGTTGCATTAAACTTGCAGATTTTGGGGCCTCCAAACAAGTTGTTGAGCTGGCTACTATTTCGGGTGCCAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAGGTTATTCTCCAGACTGGACATAGCTTCTCTGCTGACATATGGAGTGTGGGTTGCACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGCCAACAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCTCATCCGCCAATCCCTGATCATCTCTCTGTTGCAGCCAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCATATTTGAGGCCATCGGCATCAGAACTACTGCAGCATCCCTTTGTTACTGGTGAACCTATGGATTCTCTTCCTGTTTCATCTACTGTCGTGAAAAATTTGGAAACTTCATCTTCTTGTGCTCCAAATGTTGAATCCTTCCTTCGTTGCTCAAATTTGAATCTTGAGGACTCAGGAAATAAAGAGTTGTGGGGAATTAGCAACGATGATGATGACATGTGTATGATTGATGACGACGAGGAGTTCTCTCAGAATGATGTCAAACAGGAACCTTTGATCTCAGAAAATATTGAGAGCTTCAACCCGATGTCAGATCCCTCTGATGATTGGGTGTGTAAGTTTGATGGAAGTCCGGAATTGGAACATAAAGGAGTCAGTTTTGGCACAGATGAAAATGATAAGTCACTTGGTCACTTAGGGGATTATAACAAGGAGCAGAAAGATTTTTCCTTTCCGAGCGTGCCATCTCTATCAGAGGAAGATGATGAGCTCACGGAGTCAAAAATTCAAGCTTTTTTGGATGAGAAGGCTCTTGAACTGAAGAAGCTGCAGACACCTTTATATGAGGAGTTCTACAACAGTTTAAATATATCTTGTTCACCAAGTGTGATTGATGGAACAAGTGATGAAGCTGCTTCTCGGAAGTTTTTGAAATTACCTCCTAAGAGTAAGTCACCAAGTCGGATACCAAGCACTCCATCTAAAGCAGCTGACAATACTGGAAGTCCTGGAAGTAATGGCAGGTCCTCATCAACTGTTGGCAATGTAAATGATCATAGTTCACAGGACCTTCCATCTTCTCCCCTTAATGAATTTAAAGGGCTGATAGTTGACTCCCAGCAGGAACCTGGTAGCCCAAGTTTAAGCTTTTCGAAACAGAGAGAGTGGAAAGAAGAGCTCGACCAGGAGCTTGAAAGAAAACGAGAATGGAGGCGCCAAGCAGGGGTGGGGTCAAAGACTTCTTCACCAAAGGATAGAGCTTTACATCGGCAGAGAGAGCGGACACGATTTGCTTCTCCCAGCAAATAA	1986	0.4486	MQDIFGSVRRSLVFRASPENEEHSLRGTLVDKIGYCIRNSRVFSKPSLSPPSLPPIPKDVAAAAPPPPTIRWRKGELIGCGAFGQVYVGMNLDSGELLAVKQVLIAASSASKEKAQAHVKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSVAAKDFLLKCLQKEPYLRPSASELLQHPFVTGEPMDSLPVSSTVVKNLETSSSCAPNVESFLRCSNLNLEDSGNKELWGISNDDDDMCMIDDDEEFSQNDVKQEPLISENIESFNPMSDPSDDWVCKFDGSPELEHKGVSFGTDENDKSLGHLGDYNKEQKDFSFPSVPSLSEEDDELTESKIQAFLDEKALELKKLQTPLYEEFYNSLNISCSPSVIDGTSDEAASRKFLKLPPKSKSPSRIPSTPSKAADNTGSPGSNGRSSSTVGNVNDHSSQDLPSSPLNEFKGLIVDSQQEPGSPSLSFSKQREWKEELDQELERKREWRRQAGVGSKTSSPKDRALHRQRERTRFASPSK	661

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu06g00400	661	ProSitePatterns	Protein kinases ATP-binding region signature.	78	101	IPR017441	GO:0005524
	Adu06g00400	661	Coils	Coil	105	132	-	-
	Adu06g00400	661	MobiDBLite	consensus disorder prediction	442	481	-	-
	Adu06g00400	661	SMART	serkin_6	72	335	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Adu06g00400	661	Pfam	Protein kinase domain	73	335	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Adu06g00400	661	ProSiteProfiles	Protein kinase domain profile.	72	335	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Adu06g00400	661	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1	1	628	-	-
	Adu06g00400	661	MobiDBLite	consensus disorder prediction	547	587	-	-
	Adu06g00400	661	MobiDBLite	consensus disorder prediction	442	464	-	-
	Adu06g00400	661	MobiDBLite	consensus disorder prediction	611	633	-	-
	Adu06g00400	661	Coils	Coil	612	632	-	-
	Adu06g00400	661	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	196	208	IPR008271	GO:0004672\|GO:0006468
	Adu06g00400	661	Gene3D	Transferase(Phosphotransferase) domain 1	71	364	-	-
	Adu06g00400	661	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	1	628	-	-
	Adu06g00400	661	MobiDBLite	consensus disorder prediction	534	661	-	-
	Adu06g00400	661	CDD	STKc_MAPKKK	71	335	-	-
	Adu06g00400	661	MobiDBLite	consensus disorder prediction	642	661	-	-
	Adu06g00400	661	SUPERFAMILY	Protein kinase-like (PK-like)	71	355	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu06g00400	Adu-Chr6	4727629	4732030	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu06g00400	1	661	MAP Kinase Kinase Kinase	AT1G54960	57.947	0.0	688

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Adu06g00400		Pkinase	3.1e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu06g00400	K20606		-	gmx:100807537	1008.82