Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00389 ATGTTTAAACGTTCCCAGATACGCACAAGAAACTACAAGGAGTTAGGTTCCTCTGACAAAGGTAGTCAGAATCGATCACACAGCTTTTCTTTCGTACTTCGCTTTCTCAGAGGTTCCTGTGTTCTCAGAGTATTTGCGGTTGCGGAGCACAGCATCAGCTGTAAACAAAGAATGGATCATCAAGGGCATGGCCAAAACCCATCCATGGGGGTTGTCAGTAGTGGGGCTCAACTAACGTATGGTTCCAATCCGTACCAGCCAAACCAAATGACTGGGGCACCAGGGTCAGTTGTTACATCGGTTGGGAACATGCAAAGCGGTCAACCTGCTGGAGCTCAACTGGGACAACATCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCAGCAACTTCAGCAACAACTACAGGCTTTTTGGGCAAATCAATACCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGTCTCCCCTTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCGGCTGAGGCACCTGTCATATTTGCAAGGGCATGCGAAATGTTCATTTTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGAAGAACCCTTCAGAAAAATGATATTGCTGCTGCAATCACGAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTCGTGAGGACTTGAAAGATGAAGTGCTTGCATCGATCCCAAGAGGAACAATGCCTGTTGCAGGGCCAGCTGATGCAATGCCTTACTGTTATATGCCGCCTCAACATGCACCCCAAGTTGGACCTGCAGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAATATGTACGCTCAGCAATCTCATCCCTACATGGCTCCACAAATGTGGCCGCAGCCGCCAGACCAACGACAATCATCTCCGGATCACTAG 951 0.4648 MFKRSQIRTRNYKELGSSDKGSQNRSHSFSFVLRFLRGSCVLRVFAVAEHSISCKQRMDHQGHGQNPSMGVVSSGAQLTYGSNPYQPNQMTGAPGSVVTSVGNMQSGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADAMPYCYMPPQHAPQVGPAGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQRQSSPDH 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00389 316 Pfam Core histone H2A/H2B/H3/H4 118 220 IPR007125 GO:0003677
Adu06g00389 316 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 58 316 - -
Adu06g00389 316 SUPERFAMILY Histone-fold 126 229 IPR009072 GO:0046982
Adu06g00389 316 MobiDBLite consensus disorder prediction 1 25 - -
Adu06g00389 316 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 58 316 - -
Adu06g00389 316 Gene3D Histone, subunit A 119 235 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00389 Adu-Chr6 4674166 4676924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00389 58 303 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.158 5.78e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Adu06g00389 CBFD_NFYB_HMF 8.1e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00389 K08066 - gmx:100527803 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g00389 06 4674166 4676924 Adu09g01361 09 34876796 34878897 ECH
Adu06g00389 06 4674166 4676924 Adu06g00389 06 4674166 4676924 ECH
Adu06g00389 06 4674166 4676924 Adu09g01361 09 34876796 34878897 PCT