Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00277 ATGTCAAATAACAGCAGTGGAGGTAAGAAGAGAAAACTCTACCCACCAAAAGAATCCGAAGATTGGTGCTTTGAATGCAAGGATGGTGGAGAAGTCATTGTATGCGATCGCAGGAACTGTGTGAAGGTTTATCACTCCTACTGTGTTCCAGTTACCCCTGAGAAGGACAAATCTTGGATTTGTGCTTGGCATTATTGCTTCGAATGCAAGGAATCCGCAAAGTTTTATTGCCTTGGTTGTCCAAATGCTTTGTGCAAAGAGTGCTTGGCTTCCTCAGAATTTATCACTGTCAAGGGTGATAAAGGATTATGCTGCAACTGCGCGCCGCTAGTCAAAATTATAGAACAAAATTTGGAGCTGGACTCTCAGGGGAACAAGATAAGCGTGAATGGAAGAGATACATATGAGGGTCTATTCAAGGAATACTGGGAAATTATTAAGCTAAACGAAGGATTAACTAGTGATGATATCTCTGCTGCAGAAACCAACTACAACAAAGTGGTTAAAAATTCTCCAGATCAAAGCAAAGTCATTGATGTAGATAAAGAAAGTCAGAATGACTCCATGTCATCGGACGGCAATGAAGCTTTTGTGTATAAACACAACTCAACCAAAAGGAAGCAGTCCAGATCACTGGAGTTTATGGGATGGGGATCGAAACCTCTCCTTAGCTTCCTTGCGTCCATTGGAAAATTTAGTACTGAACCATTGTCACAGTGGGGTATACGGACTCTCGTGTGTGAATACATTGAGAAGAACAATCTCTATCTCTCGCAAGATAAGAAGAAGTTCCTCCTTGATGAAAAGTTGTTTCCTATATTCGGAAAAAAGGTTATGTCAAAAAATCAAATATATCCTCTATTGGAACTTCACTATGCTGAAAAGTCGGGTGATAGAGATGGTGAAGAAAGCTCGAAAGGAAAACTTAAATTGGAAAAGGAGGACTTGTCTATCAAGGCTAGTCGTTTTGCATCCATAAGTGCCAGTAATATAAGACTTATTTACTTAAGACAAAGATTGGTGCTAGAGTTATCTAAACAACTTGAAAGTTTTACGGGTAAGGTTGTTGGAGCCTTCGTTAGAGTTAAAATGGATTCCAGTGATTGTAAGCAGACTAGGTCTTACCATCTTGTGAGAGTTACAGGTGTTGTATTGGAGGATGATGTTAAGAGAATTCTTTTGCAAGTTTCCTTCATGTCTAAAGCCATCCCTATCTCCGAGCTTTCTGATAATGACTTCACAGAGCAAGAATGTGAGGATTTGCGGCTAAAAGTGAAAGCCAACCTGCTGCAGAAACTAACTGTTGTGGAGCTTCAAGAAAAGGCAAAAAGTCTTCATGAGGATATAACAAAGCATTGGATCGCGACACGACTAACCTATTTGCAAAATCAAATTGACCGTGCAAACCTGAGGGGAAGACAAAGAGAATATCCTTATGAAAGGGAAGAACTTCAACAACCATGGAAGCAAGAAGAGTTGTTAAAGCGAGTTCCTTCAGTTTCCCCAGAGTTTACTACAGAGCCCCACAATGATCCTGAAGAGAACTAA 1548 0.4025 MSNNSSGGKKRKLYPPKESEDWCFECKDGGEVIVCDRRNCVKVYHSYCVPVTPEKDKSWICAWHYCFECKESAKFYCLGCPNALCKECLASSEFITVKGDKGLCCNCAPLVKIIEQNLELDSQGNKISVNGRDTYEGLFKEYWEIIKLNEGLTSDDISAAETNYNKVVKNSPDQSKVIDVDKESQNDSMSSDGNEAFVYKHNSTKRKQSRSLEFMGWGSKPLLSFLASIGKFSTEPLSQWGIRTLVCEYIEKNNLYLSQDKKKFLLDEKLFPIFGKKVMSKNQIYPLLELHYAEKSGDRDGEESSKGKLKLEKEDLSIKASRFASISASNIRLIYLRQRLVLELSKQLESFTGKVVGAFVRVKMDSSDCKQTRSYHLVRVTGVVLEDDVKRILLQVSFMSKAIPISELSDNDFTEQECEDLRLKVKANLLQKLTVVELQEKAKSLHEDITKHWIATRLTYLQNQIDRANLRGRQREYPYEREELQQPWKQEELLKRVPSVSPEFTTEPHNDPEEN 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00277 515 CDD SWIB-MDM2_like 217 292 - -
Adu06g00277 515 SUPERFAMILY FYVE/PHD zinc finger 18 69 IPR011011 -
Adu06g00277 515 PANTHER OS01G0884500 PROTEIN 9 505 IPR045894 -
Adu06g00277 515 SMART PHD_3 22 65 IPR001965 -
Adu06g00277 515 ProSiteProfiles Plus3 domain profile. 325 450 IPR004343 GO:0003677
Adu06g00277 515 CDD PHD5_NSD 22 64 - -
Adu06g00277 515 Pfam Plus-3 domain 330 424 IPR004343 GO:0003677
Adu06g00277 515 ProSiteProfiles SWIB/MDM2 domain profile. 211 294 IPR003121 -
Adu06g00277 515 PANTHER ZINC ION BINDING / DNA BINDING PROTEIN 9 505 - -
Adu06g00277 515 Pfam SWIB/MDM2 domain 222 291 IPR003121 -
Adu06g00277 515 SUPERFAMILY Plus3-like 327 448 IPR036128 GO:0003677
Adu06g00277 515 SMART rtf1 325 427 IPR004343 GO:0003677
Adu06g00277 515 SUPERFAMILY SWIB/MDM2 domain 205 294 IPR036885 -
Adu06g00277 515 Gene3D - 326 447 IPR036128 GO:0003677
Adu06g00277 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 111 IPR013083 -
Adu06g00277 515 Gene3D SWIB/MDM2 domain 203 302 IPR036885 -
Adu06g00277 515 MobiDBLite consensus disorder prediction 490 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00277 Adu-Chr6 3390858 3394911 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00277 19 89 PHD Transcription Factor Family AT3G14980 32.911 4.85e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Adu06g00277 Plus-3 6.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00277 - - adu:107492011 1017.3