Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00276 ATGGCAAAAACTCCTTGTTGTGAGAGAATGGGTTTGAAGAAGGGACCCTGGACTGCTGAAGAAGATCAGATATTGATATCTTTCATTCATAGATATGGCCATGGAAACTGGCGTGCACTTCCTAAACAAGCTGGTTTGTTAAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATAAATTACCTGAGGCCAGATATTAAAAGAGGGAAATTCAGCAAGGAAGAGGAAGAGGCCATTCTCAAACTTCATGCAATTCTTGGAAATAGGTGGTCGGCGATTGCAGCAAGATTACCGGGTCGTACAGATAATGAAATAAAGAACTTTTGGCACACTCATTTGAAGAAAAGGATTGAGAAAAGTGAAGTGCACAATAATGGCATCAGTGGTAGTAAATATTCCTCACAAATCATCACCATGCCAAGAGTAGTAGCAGCAATTGCACCAAGTAGTGGTAGTGCTGCTTCTAGCTTCAATGATGGTTTATCCTCAACCTCAAGGAATAGATCAAGTTCATCACCAAATATTATTGCAGGACCAGGATTTTGCAGTGCAATAACATCCTCTTCAGGTGAAACCATGGGAAATCATAACGATGGTTCCATTCAGCTCAGTGAAGAGATGGAATTTTGGTACAATATATTCATCAAATCAGGACAGCTATCTTAA 663 0.4057 MAKTPCCERMGLKKGPWTAEEDQILISFIHRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEEAILKLHAILGNRWSAIAARLPGRTDNEIKNFWHTHLKKRIEKSEVHNNGISGSKYSSQIITMPRVVAAIAPSSGSAASSFNDGLSSTSRNRSSSSPNIIAGPGFCSAITSSSGETMGNHNDGSIQLSEEMEFWYNIFIKSGQLS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00276 220 CDD SANT 69 112 IPR001005 -
Adu06g00276 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Adu06g00276 220 CDD SANT 16 61 IPR001005 -
Adu06g00276 220 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Adu06g00276 220 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Adu06g00276 220 Gene3D - 13 66 - -
Adu06g00276 220 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Adu06g00276 220 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Adu06g00276 220 SMART sant 13 63 IPR001005 -
Adu06g00276 220 SMART sant 66 114 IPR001005 -
Adu06g00276 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Adu06g00276 220 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Adu06g00276 220 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 218 - -
Adu06g00276 220 PANTHER MYB TRANSCRIPTION FACTOR 1 218 - -
Adu06g00276 220 Gene3D - 68 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00276 Adu-Chr6 3384942 3386287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00276 1 216 MYB Transcription Factor Family AT1G06180 47.210 2.94e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu06g00276 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00276 K09422 - gmx:102663040 283.493