Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00180 ATGGTAAGAGCTCCTTGTTGTTCAAAAGTTGGATTGCACAGAGGTCCATGGACTCCCCGAGAAGATGCATTACTCACCCAATATATTCAATCCCATGGCGAAGGCCAATGGAGATCACTCCCTAAAAGAGCTGGCCTTCTTAGATGCGGGAAGAGTTGCAGGTTGAGATGGATGAACTATCTGAGACCAGATATCAAGAGAGGCAACATAACACCCGAGGAAGACGATCTCATCATTAGAATGCATTCACTCTTAGGGAACAGGTGGTCCCTCATCGCTGGAAGGTTACCGGGAAGAACCGACAATGAAATAAAAAATTACTGGAATACCCACCTCAGCAAGAAGGTCCTCAGGAGTCAACCCAAGAAGAAGAAGCAGAAGAAGAAAGACGCACAAGCAGAGGGAGAGGCAGAAACAGAGAAGAACAACAAGACCGTTGTTTATTTACCCAAACCAATTCGAGTTACCGCTATTCCAAGAACCAAAAGTACCCTAACCTTGGAATCCAATTCAGGAAGCGCATCAACGAGCCACGAGAAACAAGAAGTTGCGCAAGAGGTAAATAATATTGATGACGTCATGATTTGCGGTAACGTCGAAGAAGATGAGGAGCTTGGACTGTTTCTCGGTGGTGATGGTGAAGATCAATACCATATTGACCAAGTAGTCAACGGATCTGATGACGTGGAATGCGGGTCCCCTTACTTTATCGGGGATTGTGAATCCCTTGAGAAGTTATATGAAGAATACCTTCAGTTGTTGAACACGGATGACGCCAATCCTGACCAATTCGATTCTGTTAAAAATTTTCTACTGTAA 819 0.4457 MVRAPCCSKVGLHRGPWTPREDALLTQYIQSHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKVLRSQPKKKKQKKKDAQAEGEAETEKNNKTVVYLPKPIRVTAIPRTKSTLTLESNSGSASTSHEKQEVAQEVNNIDDVMICGNVEEDEELGLFLGGDGEDQYHIDQVVNGSDDVECGSPYFIGDCESLEKLYEEYLQLLNTDDANPDQFDSVKNFLL 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00180 272 MobiDBLite consensus disorder prediction 115 140 - -
Adu06g00180 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Adu06g00180 272 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Adu06g00180 272 CDD SANT 16 61 IPR001005 -
Adu06g00180 272 Gene3D - 71 145 - -
Adu06g00180 272 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 116 - -
Adu06g00180 272 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 122 263 - -
Adu06g00180 272 Gene3D - 14 66 - -
Adu06g00180 272 SMART sant 66 114 IPR001005 -
Adu06g00180 272 SMART sant 13 63 IPR001005 -
Adu06g00180 272 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Adu06g00180 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Adu06g00180 272 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Adu06g00180 272 CDD SANT 71 112 IPR001005 -
Adu06g00180 272 PANTHER MYB TRANSCRIPTION FACTOR 122 263 - -
Adu06g00180 272 PANTHER MYB TRANSCRIPTION FACTOR 1 116 - -
Adu06g00180 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Adu06g00180 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00180 Adu-Chr6 2104834 2105735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00180 4 140 MYB Transcription Factor Family AT3G13540 67.153 2.36e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu06g00180 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00180 K09422 - gmx:778044 315.464