Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00150 ATGTCCGAGGGTGCGGAGGTCAATGAGCGTGTCGACATTGATGAGGAGAATTATATGGAAGAGATTGATGATGATGTTGAAGAACAGATAGATGACCATGGACAAGAAGCACCTGAACCTCCACATGAACATAAGGGGTCACCTGCTAAGGCTGCTGCTAAAGATCAGTTGCCTGAACAAGAACAAGAAAGAAGTGACACTGCTGCAGAAATTCTCCAAGATGGGCAGAAACCATCTTCTGTCAATGAAGAAGATGAGGAGAAGGAAAAGCATGATGAACTTCTTGCCCTTCCTCCTCATGGTTCTGAAGTCTTCATTGGTGGGCTTCCTCGCGATGCCAATGAAGATGATTTGAAGGCATTGTGCGAGCCAATGGGTGACGTTCTAGAGGTGCGACTAATGAAGGACAAGGACACCGGCGAAAACAGGGGTTATGCTTTTGTGGCTTTTAAAACAAAGGAGGTAGCACAAAAGGCCATTGAAGACATACACAACAAGGAATTTAAGGGCAAAACCTTGAGGTGTTCACTGTCTGAAACAAAACACAGATTGTTCATTAGTAACATTCCAAAGACTTGGACGGAGGATGAGTTCAGGAAACATGTCGAGGCTGTTGGTCCGGGTGTTGAAAACATCGAGCTCATCAAGGACCCCCAAAACCCCACTAGGAATCGTGGGTTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGACTATTCGCGGCAAAAGATGTCAATTGCAAGTTTTAAGCTGGGTGGTAATACCCCAAATGTCACATGGGCAGATCCAAAGATCTCACCTGATCATTCTTCATCTTCACAGGTTAAAGCTCTATATGTTAAAAACATACCTGAGAATGTTACTACTGAACAACTAAAAGAACTATTCCGGCGACATGGAGAAGTGACAAAAGTGGTCATGCCACCTGGTAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGCGGTCAAGTGTATTGAAAGCTGTCAAAGATACAGAAAAATATGAAATTAATGGCCAAGTGCTTGAAGTTGTTCTTGCCAAGCCTCAAACTGATAGAAAAGCTGAAGTTAGTTATGCCTACAATCCTGTACTTCATCCAAGCCATCTTATACATCCCGGATATGGTAGTTTTTCTGGAAACGTTTACGGCTCTTTAGCTGCAGGATATGGTGTTGCTACAGGTTATCAACAGATGGTTCCAATGGTATTACCAGATGGTCAAATCGGCTATGTCCTTCAACAGCCTGGTGTACAGGCACCACCGGCCCGACCTCGCAGAACTGATCGGAACAATGGTCCAAGTGGTCAACCGGGCCGAGCAGGAGGTGGTGGCAGCGAAGAAAGCAACCGTAATAGAAGGTACCGACCCTATTAG 1392 0.4454 MSEGAEVNERVDIDEENYMEEIDDDVEEQIDDHGQEAPEPPHEHKGSPAKAAAKDQLPEQEQERSDTAAEILQDGQKPSSVNEEDEEKEKHDELLALPPHGSEVFIGGLPRDANEDDLKALCEPMGDVLEVRLMKDKDTGENRGYAFVAFKTKEVAQKAIEDIHNKEFKGKTLRCSLSETKHRLFISNIPKTWTEDEFRKHVEAVGPGVENIELIKDPQNPTRNRGFAFVLYYNNACADYSRQKMSIASFKLGGNTPNVTWADPKISPDHSSSSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSVLKAVKDTEKYEINGQVLEVVLAKPQTDRKAEVSYAYNPVLHPSHLIHPGYGSFSGNVYGSLAAGYGVATGYQQMVPMVLPDGQIGYVLQQPGVQAPPARPRRTDRNNGPSGQPGRAGGGGSEESNRNRRYRPY 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00150 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 264 IPR000504 GO:0003723
Adu06g00150 463 MobiDBLite consensus disorder prediction 13 32 - -
Adu06g00150 463 CDD RRM3_hnRNPR_like 276 354 - -
Adu06g00150 463 MobiDBLite consensus disorder prediction 33 70 - -
Adu06g00150 463 MobiDBLite consensus disorder prediction 422 463 - -
Adu06g00150 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 174 IPR000504 GO:0003723
Adu06g00150 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 347 IPR000504 GO:0003723
Adu06g00150 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 245 IPR000504 GO:0003723
Adu06g00150 463 Gene3D - 265 364 IPR012677 -
Adu06g00150 463 Gene3D - 8 182 IPR012677 -
Adu06g00150 463 SUPERFAMILY RNA-binding domain, RBD 182 356 IPR035979 GO:0003676
Adu06g00150 463 SMART rrm2_1 103 176 IPR003954 GO:0003676
Adu06g00150 463 CDD RRM_SF 104 176 - -
Adu06g00150 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Adu06g00150 463 PANTHER GEO13361P1-RELATED 2 461 - -
Adu06g00150 463 SUPERFAMILY RNA-binding domain, RBD 97 181 IPR035979 GO:0003676
Adu06g00150 463 MobiDBLite consensus disorder prediction 1 96 - -
Adu06g00150 463 Gene3D - 183 263 IPR012677 -
Adu06g00150 463 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 461 - -
Adu06g00150 463 SMART rrm1_1 183 260 IPR000504 GO:0003723
Adu06g00150 463 SMART rrm1_1 278 350 IPR000504 GO:0003723
Adu06g00150 463 SMART rrm1_1 103 176 IPR000504 GO:0003723
Adu06g00150 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 354 IPR000504 GO:0003723
Adu06g00150 463 MobiDBLite consensus disorder prediction 79 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00150 Adu-Chr6 1779179 1782129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00150 104 372 Eukaryotic Initiation Factors Gene Family AT1G22760 27.907 2.10e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00150 K13161 - gmx:100790907 718.383