Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00136 ATGGAGGGTGGGAATAGGGTTCCGGGGTCAGGGGAGGGTGACCCTTCTTACTGGCTGGACGCCTGTGAGGACATATCATGTGATTTCATTGATTTTGATGTGTCTTCAATTGTGTCTGAGCAGCCTGACAACGCTTCCAACCAGGATTTCTTTGGTGGGATTGATCGAATCCTTGATAGCATAAAGAATGGTGGTGGCCTCCCGCTTGATGCCGAATCCAATTCCAATGCTACACAACAACCATGGTTGCCTCATGATGCCCCTCCTTCTGCAGTAGCACACTCCAAGCTGCAGCACTCTCTGACTCCACTTCCTGCCTCCAATGGTTCCGCGAAGAATGAATTGGTTGCAGAGAAGCATGGTCGTACGGCAGATGCTTTTCAGCATCCACGGGCTGAAACTAACGGCTGCAATAAGTTGTTGAATGGTAATGATGAAGGGAGAGTTTTGGTTGGTTGTTTTGTGGAAAACGGAGGCCTGAGCAGAGGGCGCGATCAGTTGAGGGAATATGATGTTGATGGTGAAGAGAGATACTGCAAAAGGGCGAGGCTTGGCAACTATAAGAATGACAGGCATTATTCTGGTAGAGTTAATTATCAATTCAAGGAGAAAGAGAGGTGTTTTAATAGGAAGAGGCCTCGGGATAGTAGAGATGAGATTGATGTTAGGAGGGACAAAGATAGTAGCAGGAAAAAAGAACATTATGGCAATTGTGGCTGGAGAGATGTTAGAGATAGGGATTGGAGGGATAGAGAGCAGAGGGGTTACTGGGAGAGGGATAAATTGGGTTCTAATGACATGGTTTTTCGCGTGGGCACTTGGGAAGCCGGTAGGGATCGAGAAGAGAAAATGGCTAATGACACAAAACAGGAAAGCAATGGAAAGCTTGACAAGACATCTGAGGAGGCTAAGGAGAGGGTTCCTGAGGAGAAAGCTAGACAGTATCAATTGGATGTTCTTGAGCAGGCAAAGACGAAGAATACTATAGCTTTTCTTGAAACCGGAGCAGGGAAGACCCTCATTGCAGTTCTTCTCATCAAAAGTATACACGAGAGTTTGCAAAAGCAAAATAAAAAAATGCTTGCAGTATTTTTAGTTCCAAAAGTCCCACTTGTTTACCAGCAAGCTGAAGTAATTCGTGAGCGGACTGGCTATCAAGTGGGTCATTACTGTGGAGAAATGGGTCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTCGACACTAAACATGTCTTAGTCATGACAGCTCAAATTCTTCTGAACATCTTGAGGCATAGCATCATTAAAATGGAAGCAATCAATCTCCTAATTCTTGATGAGTGCCATCATGCTGTTAAGAAACATCCATATTCGCTGGTGATGTCTGAGTTCTACCACACAACTCCTAAAGAGAACAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTAAACTTGAAGGGAGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGAAATCTTGAGAGCAAGCTGGATTCAATAGTTTGTACCATTAAAGATCGCAAGGAGCTGGAGAGACATGTGCCCATGCCCTCTGAAGTTGTGGTGGAGTATGACAAAGCCGGCAGTTTATGTTATCTACATGAGCAAATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATCGAGTTCAAGGAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGCGCAAAAGAGGAGCTGCGACAAGTATATGGTGTTTCTGAGAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATCAATTATGCACTTGGTGAACTGGGGCAGTGGTGTGCATTTAAGGTTGCCCAATCTTTTCTAGCAGCTTTGCAGAATGATGAAAGGGCTAACTACCAACTAGATGTCAAGTTTCAGGAATCTTATCTTAGCAAAGTTGTCTCTCTTCTGAAATGTCAGTTGTCAGAGGGTGCAGTTTCTGACAAACATGCTGAAGTTGATGACTCAAAGCATGAAACAACTTGCAATGGGACTGAACCTGAAGAGATTGAGGAAGGAGAACTTCCAGACAGTCATGTTGTCTCTGGTGGGGAGCATGTGGATGTCATAATAGGAGCAGCTGTAGCTGATGGGAAGGTGACCCCCAAGGTGCAGGCACTCATCAAAATACTACTGAAGTATCAGAACACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCATTAGTTCTACCGAAGGTCTTTGCAGAGCTCCCATCTCTTAGTTTTGTGAAATGTGCAAGCTTGATTGGTCACAACAATAGTCAGGAAATGCGGACCTACCAAATGCAGGATACAATTGCCAAGTTCCGTGATGGGAGGGTTACATTGTTAGTTGCTACTAGTGTTGCTGAAGAAGGGCTTGATATCCGGCAATGCAATGTCGTTATTCGCTTTGACCTTGCAAAGACTGTTCTGGCATACATTCAATCTAGGGGTCGTGCTAGAAAGCCTGGGTCTGATTACATCCTGATGGTTGAGAGGGGAAATTTGTCACATGAAGCATTCCTTAGGAATGCAAGAAACAGCGAGGAGACCTTACGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAAGACACTTCAAGATTGATTTCAGTAGATACCCGACCGGGAACAGTTTACCAGGTCAAGTCAACCGGGGCAGTTGTGAGCTTAAATTCTGCTGTAGGTCTTATCCACTTCTACTGTTCCCAACTACCAAGCGACAGGTATTCAATTCTTCGCCCTGAGTTTATCATGGAGAAGCATGAAAAACCAGGATGTCCCACTGAATATTCTTGCAAGCTTCAACTACCTTGTAATGCGCCATTTGAAAATCTTGAGGGTCCTATCTGCAGTTCAATGCGTCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAATTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCGGACAAAGGAAGTGGGGGAGAAAGAGAAAAGGCTGAGCAAAATGATGAAGGGGATCCACTTCCAGGGACTGCTAGACACAGGGAGTTCTATCCTGAAGGTGTGGCTGACACACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTACAACAATTCCAAATTGTTTCATCTTTATATGTATTCCGTGGAGTGCGAAAATGTAGGAATTTCAAAGGATCCGTTCTTAACTCAAGTTTCAGATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTAGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACTGTGACTACAAAGGCATCTCTTGTCTTTAGAGGGTCAATAGATATCAGTGAGAGTCAGTTGGCGACCCTGAAAAGCTTTCATGTACGGTTAATGAGCATTGTCTTGGATGTGGATGTTGAACCTTCTACCACTCCTTGGGATCCCGCAAAAGCATATTTATTTGTCCCAATGATTAGCGATAAGTCTGTAGATCCTGTGAAACAAATTGACTGGTTTATGGTCGAGACAATAATTGGATCGGATGCATGGAAAAATCCCCTCCAGAAGGCTCGGCCAGATGTTTACCTTGGTACTAATGAGAGAACTTTAGGTGGAGACAGAAGGGAGTATGGATTTGGAAAATTGCGTCATGGCATGGCGTTTGGGCAAAAAGCACATCCAACCTATGGAATCAGAGGAGCTGTAGCCCAGTTTGATGTGGTAAAAGCTTCAGGATTGGTTCCTAACAGAGATGCCATCCAAACACAAAAACATATCAGTTTGACGACCAAAGGAAAATTGATGATGGCGGATACTTGTACTAACGCAGAGGATCTGGTTGGGAAAATTGTAACTGCTGCACACTCTGGGAAGAGGTTTTATGTTGATTCAATACGTTATGATATGTCTGCAGAGAAGATTATTACAAGCAAAAGTATGATAGGGTGCATGTGGCTACTTGTTATTTTGTTGATTTATTGTAGGTATGGGGTTGATTTGATTTACAAGCATCAACCGCTTATAAGAGGGCGTGGTGTGTCATACTGTAAGAATCTTCTTTCCCCTCGATTCGAACACAGTGAAGCACATGAAGGAGAATCTGAAGAATCTCATGACAAAACATATTACGTGTTCCTTCCTCCTGAACTATGCCTAGTACACCCTCTTCCTGGATCACTTGTTCGGGGTGCCCAGAGATTGCCTTCAATCATGAGGAGGGTTGAAAGTATGCTACTTGCAGTTCAGCTTAGGAATATGATAAATTATCCTGTGCAGGCTTTGAAGATCTTGGAGGCCTTGACTGCTGCATCTTGTCAGGAGACATTCTGCTATGAAAGGGCAGAGCTTCTTGGAGATGCTTACCTGAAATGGGTCGTTAGTCGATTTCTTTTCCTAAAATACCCGCAGAAACATGAGGGCCAACTTACTAGGATGAGGCAACAAATGGTCAGCAACATGGTTTTATATCAGTATGCATTAAGTAAAGGCCTTCAATCATATATTCAAGCAGATCGCTTTGCCCCATCAAGATGGGCGGCTCCTGGGGTGCTGCCTGTCTTCGATGAGGATACCAAGGATGGAGAGTCAACTTTATTTGACCAGGATACATCCATTTCTAACACTGAGAGAATGGATTGTCACACTGATGAATATGAAGATGAGCTGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACAGAGTACTGTCCAGCAAGACACTTGCTGATGTTGTGGAAGCACTCATTGGTGTATATTATGTCCAAGGAGGTAAGCGTGCCGCTAACCACCTTATGAAATGGATTGGCATTCAGATAGAGTTTGATCCTGCTGATGAGATGGACTGTGCAAGAAAGCCTTTCAATGTTCCAGAGAGCATACTTAGGAGTGTTGATTTTGATGCATTAGAAGGTGCTTTGAATATGAAGTTTAAAGACAGGGGGCTTCTGGTAGAAGCCATTACTCATGCGTCCAGACCATCATCAGGAGTATCCTGTTATCAGCGGTTGGAATTTGTTGGTGATGCAGTTTTGGACCATCTTATTACCAGGCATTTGTTTTTCACTTACACAAATTTGCCACCGGGACGATTGACTGACCTTCGGGCTGCTGCTGTAAATAATGAAAATTTTGCTCGTGTTGCAGTTAAACACAATCTTCATGTGCATCTCCGACATGGGTCTAGTGCCTTAGAAAAGCAGATCAAAGAATTTGTCAAGGAAGTTCAGGATGAATTGTCAAAACCGGGATTTAACTCCTTTGGCCTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTTGAATCTATTGCTGGCTCCATTTTTCTTGATAGTGGAAGGGACACTACTCTCGTTTGGAAGGTTTTTCAGCCTCTATTGCATCCCATGGTTACACCAGAGACTCTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGCCAGCAGCAGGCCGAAGGCTTAGAATACAGAGCAAGTCGTGTTGGCAATCTGGCCACTGTTGAAGTATTCATTGATGGCGTGCAAGTTGGGGCCGCTCAAAATCCACAAAAGAAAATGGCTCAGAAATTAGCTGCCAGAAATGCCCTAGCTGCTTTGAAAGAAAAGGAGGTGGCAAAGAATCAGAAGAATGATGAAAATGGGAAAAAGAATGGAAACCAAACATTTACCAGACAAACATTAAACGATATTTGTTTGCGAAGAAATTGGCCTATGCCATTCTATCGATGTGTGAATGAGGGTGGTCCAGCACATGCGAAGCGTTTCACATTTGCGGTGCGCGTCAATACTACTGATAGAGGATGGACAGATGAATGTGTTGGAGAGCCAATGCCCAGTGTCAAGAAGGCCAAAGACTCTGCTGCTGTTCTTCTCTTAGAACTACTAAATAAATTATACTCATGA 5913 0.4402 MEGGNRVPGSGEGDPSYWLDACEDISCDFIDFDVSSIVSEQPDNASNQDFFGGIDRILDSIKNGGGLPLDAESNSNATQQPWLPHDAPPSAVAHSKLQHSLTPLPASNGSAKNELVAEKHGRTADAFQHPRAETNGCNKLLNGNDEGRVLVGCFVENGGLSRGRDQLREYDVDGEERYCKRARLGNYKNDRHYSGRVNYQFKEKERCFNRKRPRDSRDEIDVRRDKDSSRKKEHYGNCGWRDVRDRDWRDREQRGYWERDKLGSNDMVFRVGTWEAGRDREEKMANDTKQESNGKLDKTSEEAKERVPEEKARQYQLDVLEQAKTKNTIAFLETGAGKTLIAVLLIKSIHESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKENRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELERHVPMPSEVVVEYDKAGSLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAFKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKHAEVDDSKHETTCNGTEPEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPGCPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKAEQNDEGDPLPGTARHREFYPEGVADTLKGEWILSGKDAYNNSKLFHLYMYSVECENVGISKDPFLTQVSDFAVLFGNELDAEVVLSMSMDLFIARTVTTKASLVFRGSIDISESQLATLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMISDKSVDPVKQIDWFMVETIIGSDAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKAHPTYGIRGAVAQFDVVKASGLVPNRDAIQTQKHISLTTKGKLMMADTCTNAEDLVGKIVTAAHSGKRFYVDSIRYDMSAEKIITSKSMIGCMWLLVILLIYCRYGVDLIYKHQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEESHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLRNMINYPVQALKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESTLFDQDTSISNTERMDCHTDEYEDELEDGELESDSSSYRVLSSKTLADVVEALIGVYYVQGGKRAANHLMKWIGIQIEFDPADEMDCARKPFNVPESILRSVDFDALEGALNMKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGSIFLDSGRDTTLVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRVGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVAKNQKNDENGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS 1970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00136 1970 ProSitePatterns Ribonuclease III family signature. 1669 1677 IPR000999 GO:0004525|GO:0006396
Adu06g00136 1970 SUPERFAMILY dsRNA-binding domain-like 1896 1966 - -
Adu06g00136 1970 Pfam Type III restriction enzyme, res subunit 314 478 IPR006935 GO:0003677|GO:0005524|GO:0016787
Adu06g00136 1970 Gene3D Ribonuclease III domain 1631 1805 IPR036389 GO:0004525|GO:0006396
Adu06g00136 1970 SUPERFAMILY dsRNA-binding domain-like 1764 1887 - -
Adu06g00136 1970 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1808 1871 IPR014720 -
Adu06g00136 1970 MobiDBLite consensus disorder prediction 662 677 - -
Adu06g00136 1970 CDD DEXHc_dicer 311 510 - -
Adu06g00136 1970 SMART PAZ_2_a_3 1255 1413 IPR003100 GO:0005515
Adu06g00136 1970 MobiDBLite consensus disorder prediction 279 308 - -
Adu06g00136 1970 ProSiteProfiles Ribonuclease III family domain profile. 1634 1782 IPR000999 GO:0004525|GO:0006396
Adu06g00136 1970 MobiDBLite consensus disorder prediction 996 1020 - -
Adu06g00136 1970 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1892 1965 - -
Adu06g00136 1970 PANTHER DICER-RELATED 266 1968 - -
Adu06g00136 1970 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1892 1967 IPR014720 -
Adu06g00136 1970 ProSiteProfiles PAZ domain profile. 1251 1389 IPR003100 GO:0005515
Adu06g00136 1970 Gene3D paz domain 1271 1387 - -
Adu06g00136 1970 SMART helicmild6 748 834 IPR001650 -
Adu06g00136 1970 SMART riboneu5 1649 1805 IPR000999 GO:0004525|GO:0006396
Adu06g00136 1970 SMART riboneu5 1428 1612 IPR000999 GO:0004525|GO:0006396
Adu06g00136 1970 Gene3D - 1806 1884 - -
Adu06g00136 1970 SUPERFAMILY RNase III domain-like 1633 1803 IPR036389 GO:0004525|GO:0006396
Adu06g00136 1970 Gene3D - 705 871 IPR027417 -
Adu06g00136 1970 Gene3D - 1898 1968 - -
Adu06g00136 1970 MobiDBLite consensus disorder prediction 69 83 - -
Adu06g00136 1970 CDD DSRM_DCL_plant 1898 1959 - -
Adu06g00136 1970 Gene3D - 306 550 IPR027417 -
Adu06g00136 1970 MobiDBLite consensus disorder prediction 662 681 - -
Adu06g00136 1970 Gene3D Ribonuclease III domain 1411 1606 IPR036389 GO:0004525|GO:0006396
Adu06g00136 1970 CDD SF2_C_dicer 712 842 - -
Adu06g00136 1970 CDD RIBOc 1430 1610 IPR000999 GO:0004525|GO:0006396
Adu06g00136 1970 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 718 879 IPR001650 -
Adu06g00136 1970 MobiDBLite consensus disorder prediction 212 235 - -
Adu06g00136 1970 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 319 496 IPR014001 -
Adu06g00136 1970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 846 IPR027417 -
Adu06g00136 1970 Pfam PAZ domain 1273 1409 IPR003100 GO:0005515
Adu06g00136 1970 Pfam Dicer dimerisation domain 907 995 - -
Adu06g00136 1970 Coils Coil 1862 1882 - -
Adu06g00136 1970 CDD RIBOc 1650 1805 IPR000999 GO:0004525|GO:0006396
Adu06g00136 1970 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 266 1968 - -
Adu06g00136 1970 SUPERFAMILY RNase III domain-like 1405 1610 IPR036389 GO:0004525|GO:0006396
Adu06g00136 1970 Pfam Ribonuclease III domain 1669 1782 IPR000999 GO:0004525|GO:0006396
Adu06g00136 1970 Pfam Ribonuclease III domain 1446 1592 IPR000999 GO:0004525|GO:0006396
Adu06g00136 1970 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 907 1002 IPR005034 GO:0016891
Adu06g00136 1970 SMART ultradead3 308 511 IPR014001 -
Adu06g00136 1970 MobiDBLite consensus disorder prediction 993 1020 - -
Adu06g00136 1970 SMART DRBM_3 1893 1966 IPR014720 -
Adu06g00136 1970 SMART DRBM_3 1809 1870 IPR014720 -
Adu06g00136 1970 MobiDBLite consensus disorder prediction 68 91 - -
Adu06g00136 1970 Gene3D Dicer dimerisation domain 902 1003 IPR038248 -
Adu06g00136 1970 Pfam Helicase conserved C-terminal domain 715 832 IPR001650 -
Adu06g00136 1970 ProSiteProfiles Ribonuclease III family domain profile. 1432 1592 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00136 Adu-Chr6 1651435 1661220 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00136 731 874 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 1.75e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00136 K11592 - gmx:100811631 3305.77