Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00134 ATGGAAGAAGAAGTGAAAGGATATTCCGATAGCAGAGAAGAGGAGGAGGAGGAGGAGGAAGACGAAGCAGCGGAAATCATCCCAATTCCAAACACAAGACAAGAAACCAACAGCAGCGGAAACAGGTTACAGCAGCAGCAAGATACAGCAGTAGCTCCCAATTTCAGTCAGCGGAAGCAGCTAGATTTGATGGAGTTGTCACTAGGGAGCGGGAGCAGCAAGGACGATCGGAATTGGCAGCAAGGAGGAGGAGGAGGAGGAGGAATGGTTGGTTCTTGCTCATCATCATCATCGGAGGCGGTGGAGAAAGAGCACATGTTCGACAAAGTGGTGACCCCAAGCGACGTAGGGAAGCTGAACAGGCTAGTGATACCGAAGCAGCACGCGGAGAAGTACTTTCCATTGGACTCATCCTCCAACGATAAGGGGCTTCTCCTCAACTTCGAGGACAGGAACGGCAAGCTGTGGCGCTTCAGATACTCCTACTGGAACAGCAGCCAGAGCTATGTTATGACCAAAGGCTGGAGTCGCTTCGTTAAGGAGAAGAAGCTCGACGCCGGCGACATTGTCTCCTTCCACCGCGGCCTCGGGGAACTCTATAGACACAGGCTGTACATTGACTGGAGGCGCAGGCCCGACCATCCCCCTCCTGACCCTTCCGCCTCCCTCATCTCCCCTTTCTTCCTTCCTAACCACTACTCCGCCGCCATCACATGGGGCGCCGGCGGCAGGTTCTACTCTCTGCCTTCTCCCACGCCTCCTCCTCGCCACCATCACTTTCATCATCATCAGCACCACCCCCTCGCTACTAATTACAACACCCATATGTATGGCTTTCATCATCATCCAGGTGCTGCAGCAACTGGAACAAGTCATCATCTTCTCAGCGGTTACAACGATCAGCAGCTGAATTCCGGATCTCCTGGACCTCTCTATTACCTGAGGTCACCCCCCTCAATGTCAATTGTTGACCCCAACTTGCATCAGGAGAGAGGGACTGCTATTGCCCCCATGATCATTGATTCTGTGCCGGTTGCTCATCATCATCATCAACAACAGCAACATCAACATGGTGTGGTGCCTAATAGTAGTAACTTTGACAGTACTAATACCGCAGGAAAACGGCTGAGGCTATTTGGGGTCAACATGGAATGTGCTTCTTCTTCTTCTTCTTCCCCAGCTGAAGATCACTCGCATTTGGCAATGTCTAGTTCATTACCATCGTCAAGCAGTTGTACAGCTGTAAAAAAGCAGCAGCAGCCGCCGCTTTCTTCTGCTCAAATACCCTCTTTTAATTTGGATTCATGTAAAGTTCGCGGCTTCTCTCTCAAGAGTTTTAGCTTCAAAAAGTATAATTGA 1359 0.5077 MEEEVKGYSDSREEEEEEEEDEAAEIIPIPNTRQETNSSGNRLQQQQDTAVAPNFSQRKQLDLMELSLGSGSSKDDRNWQQGGGGGGGMVGSCSSSSSEAVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNDKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGLGELYRHRLYIDWRRRPDHPPPDPSASLISPFFLPNHYSAAITWGAGGRFYSLPSPTPPPRHHHFHHHQHHPLATNYNTHMYGFHHHPGAAATGTSHHLLSGYNDQQLNSGSPGPLYYLRSPPSMSIVDPNLHQERGTAIAPMIIDSVPVAHHHHQQQQHQHGVVPNSSNFDSTNTAGKRLRLFGVNMECASSSSSSPAEDHSHLAMSSSLPSSSSCTAVKKQQQPPLSSAQIPSFNLDSCKVRGFSLKSFSFKKYN 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00134 452 Gene3D - 100 215 IPR015300 -
Adu06g00134 452 MobiDBLite consensus disorder prediction 1 95 - -
Adu06g00134 452 Pfam B3 DNA binding domain 107 211 IPR003340 GO:0003677
Adu06g00134 452 MobiDBLite consensus disorder prediction 30 79 - -
Adu06g00134 452 MobiDBLite consensus disorder prediction 387 428 - -
Adu06g00134 452 ProSiteProfiles B3 DNA-binding domain profile. 107 212 IPR003340 GO:0003677
Adu06g00134 452 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 23 416 - -
Adu06g00134 452 MobiDBLite consensus disorder prediction 9 25 - -
Adu06g00134 452 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 23 416 IPR044800 GO:0003700
Adu06g00134 452 SMART B3_2 107 212 IPR003340 GO:0003677
Adu06g00134 452 CDD B3_DNA 105 194 IPR003340 GO:0003677
Adu06g00134 452 SUPERFAMILY DNA-binding pseudobarrel domain 104 212 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00134 Adu-Chr6 1580778 1585034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00134 97 388 RAV Transcription Factor Family AT2G46870 48.173 1.39e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu06g00134 B3 5.1e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00134 - - gsj:114390989 361.688