Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00113 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGGCGGCGGCGGCGGTGACAGCTAGGTCTCGCCGGCTCACCGCGGAGTACCTGTGGCCTGACCTGAAGAAAGGCAGCTCAGGGAAGCGCGTGCCGAAGGCAGCGGTAATCGACCTCGACGATGATTTCGAGGCCGATTTCAGGGAATTCAAGGACGACTCCGACATCGACATTGACGACGATGAGGATGATGCCAAGCCCTTTGCTTTCGCCGCCGCCAAAGCTCCCAAGTCCATATCCCGTGGTGCTGGAAAATCTGCGGTCAAAGCACAATCTGAGAAGTCTGCAAAGAGAAAGAGGAAGAATCAGTACAGGGGAATCCGTCAGCGTCCTTGGGGGAAATGGGCGGCTGAGATCCGTGATCCAAGAAAGGGTGTTCGTGTCTGGCTAGGAACCTTCAGCACTGCTGAAGAGGCTGCCAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGAAGAGGCACCACGCACTCCTCCGAAACGTGCCAGGCCAAATCTGAATGCTGTTCAGCCCAATCTGAGTCATAAATTCAGTGTTGGTAACAATATGGAGAACTATGGTCCTCTGGATGGGTTTGAACAGAAACCACTGGTTAACCAGACTGCTAACATGGACTCCATTCCTGAGGGTGGAAATGGTTTTACATCCCTTACCTCACCTGATGATGTGACCCTTTACTTCAGCTCGGATCAGGGGAGTAATACATTTGATTATTCAGATCTTCGCTGGGGTGAACAGGCCCCAAAGACTCCCGAGATCTCATCCATGCTTTCTGCTGCTCTGGAAGGGGAATCTCCTTTTGAGCAAGATGCTAACCAACAGAAAAATCTGCAGTCTATCTCACAGGATGTGGTACCTATGAAAGATGATTCTTCAAAGACACTGTCTGAGGAGCTTGTGGATATTGAATCCGATTTGAAATTCTTTCAGATGCCTTTTCTTGAAGGGAGCTGGGATGATACTTCATTGGAATCTTTGCTAGCTGGAGACACCACTCAGAATGGTGAAAACCTGATGAACCTGTGGAGCTTTGATGACATTCCTTCCATGTCTGGTGGTGTGTTCTGA 1128 0.5009 MCGGAIISDFIPAAAAVTARSRRLTAEYLWPDLKKGSSGKRVPKAAVIDLDDDFEADFREFKDDSDIDIDDDEDDAKPFAFAAAKAPKSISRGAGKSAVKAQSEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPEEAPRTPPKRARPNLNAVQPNLSHKFSVGNNMENYGPLDGFEQKPLVNQTANMDSIPEGGNGFTSLTSPDDVTLYFSSDQGSNTFDYSDLRWGEQAPKTPEISSMLSAALEGESPFEQDANQQKNLQSISQDVVPMKDDSSKTLSEELVDIESDLKFFQMPFLEGSWDDTSLESLLAGDTTQNGENLMNLWSFDDIPSMSGGVF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00113 375 CDD AP2 114 172 IPR001471 GO:0003700|GO:0006355
Adu06g00113 375 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Adu06g00113 375 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Adu06g00113 375 SUPERFAMILY DNA-binding domain 114 172 IPR016177 GO:0003677
Adu06g00113 375 PANTHER DNA-BINDING DOMAIN 1 369 IPR044808 GO:0003700|GO:0009873
Adu06g00113 375 PANTHER EREBP TRANSCRIPTION FACTOR 1 369 - -
Adu06g00113 375 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Adu06g00113 375 MobiDBLite consensus disorder prediction 92 118 - -
Adu06g00113 375 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Adu06g00113 375 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Adu06g00113 375 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00113 Adu-Chr6 1390945 1393747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00113 1 375 AP2-EREBP Transcription Factor Family AT1G53910 45.499 2.51e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu06g00113 AP2 4.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00113 K09286 - gmx:100170723 430.254