Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00109 ATGGATTCGATAAACTCGTTCAAAGGGTATGGCAAAGTGGACGAGGCAGAGCAGCAAGCCTTCCAGAAGAAGACTCGCAAGCGCCTCATCATACTCATAGTCTCCTCCATAGTCCTCATCGCCGTCATCATCGCCGCCGTCTTAGGCACCGTCCTACACAGCCGCCGTTCTTCCTCTGGCCCCTCAACGGAGCTATCCCCGGTGTCCTCTCTGAGAGCCGTGTGCGAAGTCACCCAGTACCCAGAGTCGTGCATGTCGAGCATCTCCTCCCTCCCAGACTACTCCAACACCACCGACCCACACCTCCTCTTCAGCCTCTCTCTCCGCGTAGCCATTAACGAGCTCTCCAACCTCTCCCATTATCCTTTCAAGCTCCGCTCCTCCATCAAGGAACCCCGTCTCCAGAAAGCCATTGATGTCTGTGCTACGGTCCTCGCCGACGCTGTCGCCAATTTCAACGACTCCGTCTCCACCCTCGACGCCGCCGGCAAGCTACCATCTACCACCAAGATCAGTGACATTAAGACCTGGGTGAGCGCCGCCATCACCAACCAAGATACCTGCTTGGACGCCCTCGAGGAGGTTAATAACTCCACCGCCGCCAACGCCGCCCTCGAGGACATGAAAACCACCATGAAGAACTCCACGGAGTTCTCGAGCAACAGCCTGGCCATCGTGACGAGGATCCTGGGGCTGCTCTCCCAATTCAACAGCCCGATGAACAGGCGGCGGCTTCTGGGGTTCCCGGAGTGGGTGGGGGCGGCGGAGAGGAGGCTGCTGCTGGATAATGGGAACACCGCGACGGGAACGACGACGCCGGATGCGGTGGTGGCGAGCGATGGGAGTGCGCAGTACAAGACGATAAAGGAGGCGGTGCTTGCGGTGAAGAAGAAGAGCGAGAAGAGATTCGTGATATATGTGAAGGCAGGGACTTATGTTGAGAACATTGATTTGGATAAGGACACTTGGAATGTGATGATCTACGGTGATGGAAGTGACAAGACCATCATCTCCGGCAGCCGCAACTTCATCGACGGCACTCCCACTTTTGAGACTGCCACTTTCGCTGTGAAGGGAAAGGGTTTCATTGCGAAGGACATACGGTTCAAGAACACAGCAGGCGCAGACAAGCATCAGGCGGTGGCACTGCGATCAGGGGCGGACCAATCAGTGTTCTACAGGTGCTCCTTCGAGGGTTTCCAGGACACACTCTACGCCCATTCCAACAGGCAGTTCTACCGCGACTGCGACATCACCGGCACCATCGACTTCATCTTTGGCAACGCCGCAGTGGTCTTCCAGAACTGCAAGATCATGCCACGTCAGCCTCTCCCCAACCAGTTCAACACCATAACCGCTCAGGGAAAGAAAGACCCCAACCAGAACACCGGCATCGTCATCCAGAAATGCTCCTTCTCTGCCTTCGCCAATGATCTTCAGGCCCCTACCTACCTTGGCCGCCCTTGGAAGGATTTTTCCACCACCGTCATCATGCAGTCCGACATCGCCTCCTTCTTGAAGCCCGTGGGCTGGATAAGCTGGGTTGCCAATGTCGATCCACCAAAAACTATATTTTACGGTGAGTACCGCAACACTGGGCCTGGATCCGATGTCTCGCAACGGGTTAAGTGGGCTGGCTATAACCCCTCTCTAACTGAAACTGATGCTGCCAAGTTCACAGTGCAGTCCTTTATTCAGGGCCCGGATTGGTTGCCAAATTCTGCTGTAAACTTTGACTCCACTCTCTGA 1749 0.5563 MDSINSFKGYGKVDEAEQQAFQKKTRKRLIILIVSSIVLIAVIIAAVLGTVLHSRRSSSGPSTELSPVSSLRAVCEVTQYPESCMSSISSLPDYSNTTDPHLLFSLSLRVAINELSNLSHYPFKLRSSIKEPRLQKAIDVCATVLADAVANFNDSVSTLDAAGKLPSTTKISDIKTWVSAAITNQDTCLDALEEVNNSTAANAALEDMKTTMKNSTEFSSNSLAIVTRILGLLSQFNSPMNRRRLLGFPEWVGAAERRLLLDNGNTATGTTTPDAVVASDGSAQYKTIKEAVLAVKKKSEKRFVIYVKAGTYVENIDLDKDTWNVMIYGDGSDKTIISGSRNFIDGTPTFETATFAVKGKGFIAKDIRFKNTAGADKHQAVALRSGADQSVFYRCSFEGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCKIMPRQPLPNQFNTITAQGKKDPNQNTGIVIQKCSFSAFANDLQAPTYLGRPWKDFSTTVIMQSDIASFLKPVGWISWVANVDPPKTIFYGEYRNTGPGSDVSQRVKWAGYNPSLTETDAAKFTVQSFIQGPDWLPNSAVNFDSTL 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00109 582 Gene3D - 268 582 IPR012334 -
Adu06g00109 582 CDD PMEI-like_3 73 229 - -
Adu06g00109 582 ProSitePatterns Pectinesterase signature 2. 418 427 IPR033131 -
Adu06g00109 582 PANTHER PECTINESTERASE 1-RELATED 8 579 - -
Adu06g00109 582 ProSitePatterns Pectinesterase signature 1. 299 318 IPR018040 -
Adu06g00109 582 SMART PMEI_2 66 225 IPR006501 GO:0004857
Adu06g00109 582 SUPERFAMILY Pectin lyase-like 270 580 IPR011050 -
Adu06g00109 582 PANTHER PECTINESTERASE 8 579 - -
Adu06g00109 582 TIGRFAM PME_inhib: pectinesterase inhibitor domain 43 227 IPR006501 GO:0004857
Adu06g00109 582 Pfam Pectinesterase 274 567 IPR000070 GO:0030599|GO:0042545
Adu06g00109 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 230 IPR035513 -
Adu06g00109 582 Pfam Plant invertase/pectin methylesterase inhibitor 70 225 IPR006501 GO:0004857
Adu06g00109 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 229 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00109 Adu-Chr6 1350033 1353715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00109 1 576 Carbohydrate Esterase AT1G53840 59.459 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00109 - - gmx:100777128 852.818