Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00088 ATGGCTTACATCTCTGCTTCGACAAGAACCATCCTCTTCTTATCTCGTTCAACCACCAAACTCTCCCTTTTCCCTTTCAAACCCTCTTTCTCTTCCCTCACTCTCCATTTCACCAGAACTAAATGCACTCTCCAACACCAACCTCAAACTCTGCTTCGCCGCAACATCATCGAAGTCCTCGAAGAGCGCGGCCTCCTCGACTCCACCACCAACGACTCCGCCCTCAGATCCTCCGCCGCCGCTAATTCCCCGCCTTTGAAGGTTTACTGCGGCTTCGACCCCACTGCAGAGAGCCTCCACCTCGGCAACCTCCTCGGAATCATCGTCCTCTCCTGGTTCCGCCGCTGCGGCCACCAACCCGTTGCCCTCATCGGCGGCGCCACCGCCCGCGTCGGCGACCCCTCCGGCAAGTCACTGGAGCGGCCGGAGCTCGACGTTGCCACACTAGAGAGGAACACGGCAGGTATATCCCAAACTATCAAACAAATTCTAGGTCGCTCTCTGAATTCGAACTTGGAAGGTTCTAAGGTTGTGATTTTGAATAACTATGACTGGTGGAAAGAGTTTAGTTTGTTAGATTTTTTGAAGAATGTTGGTAAGTATGCTAGGGTTGGGTCTATGATAGCTAAGGAGAGTGTTAGGAAGAGATTGGAATCTGAACAAGGAATGAGTTATACTGAACTCACCTACCAGTTGTTGCAGGGATATGATTTCTTGTACTTGTTTCAGAATGAGGGTGTGAATGTTCAGATTGGGGGGAGTGATCAGTGGGGGAATATAACTGCTGGGACTGAGTTGATTCGGAAGATCTTGCAGGTCGAGGGCGCTTATGGACTTACATTCCCTCTTTTGTTGAAGAGTGATGGTACTAAGTTTGGAAAATCGGAGGATGGCGCGATTTGGCTTTCACCTGCGATGTTGTCACCTTACAAATTTTATCAGTATTTTTTCACGGTTCCAGATGCAGATGTTATTAGGTTTTTGAAGATTCTCACGTTTTTGGATATTGAGGAGATAGCTGCATTGGAAGGGGAGATGAAGAAACCGGGTTATGTGCCTAATACTGCTCAGCGCAGACTTGCTGAGGAAGTTACAAGGTTTGTTCACGGGGATGAGGGTTTGACTGAGGCACTTAAGGCTACAGAAGCATTGCGGCCTGGATCTGAGACAAAGTTGGACTGGAAAACTATCGAGGGAATAGCTGAGGGTGTACCATCTTGTTCTTTGGCTTATGACAGTGTTTTGAACTTGTCATTGGTAGATCTTTCGGTCTCTTCTGGTTTGTTTGAGAGCAAATCTGCCGCGCGCCGCTTGTTGAAGCAAGGGGGTCTTTACTTGAACAATAACAGAGTGGATAGTGAAAATAAGAGGATCGAGGAAGCAGATATAGTGGATGGGAAAGTTCTCCTTATATCTGCTGGCAAAAAGAATAAGAACCTGTTGTGGTTTGTTTGGGGATCTGAGACGTCATTGAAGAAAAAACCGGACGAGGATACTCTAATGGTATTGTCTCTGTTAAGGTATTATGGACATATCTTTGTTAAATGTGCTCTCCAATGGCATATCCTCATTTTTGCATCCATCATTTTCTGGAAACATGAACTCAAAACCTGTATCAATTCTGTTGATGAGTTGAGGGAGCTTTTCGAGAATTGGCATCCACTATCCAGTAAATTTTACTTTAAGCTGAAGGCTTCACAGCAATGTCTACCTGATGATATGACATCAATCATTAAGGAAGCTATAAATGAACAACTGGAAGGCGAAGATTCCTTTAGTGGCGTGGATAATGCACAGCATGTGGATCCTGTAAGAATATCAGACGAAGAAAGTGTGGATTTAGTTTCCCAATCATCAACTTCACCATCTAGAAGGGAAGCTTCAAATGCCTTGAGATCAGAGCAATCTCAAAACCATAGACAGGTGGTTGAGGATAACAAGATCAGGATAGGGAGGGCCGGGGCCATTAAACCTCTGGTTGAGTTATTAAGCTGTGGCTGTTCTAGCAAATCTGGGCAGCAAGGTGGCATTCCTCTTCTGGTTGAGGTTGTTGGGTTGGGTTCTACTAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATTTAAACATGGTACTCCAAGAAGGAGCTGTTCCACCATTAGTAGCTTTATCACCATCAGGCACCGCAAGGGCTAAAGAGAAGTTTTCTCTTTATCTTCTTTGTTTTGTTACAAAATGTGGTGACTGA 2229 0.4567 MAYISASTRTILFLSRSTTKLSLFPFKPSFSSLTLHFTRTKCTLQHQPQTLLRRNIIEVLEERGLLDSTTNDSALRSSAAANSPPLKVYCGFDPTAESLHLGNLLGIIVLSWFRRCGHQPVALIGGATARVGDPSGKSLERPELDVATLERNTAGISQTIKQILGRSLNSNLEGSKVVILNNYDWWKEFSLLDFLKNVGKYARVGSMIAKESVRKRLESEQGMSYTELTYQLLQGYDFLYLFQNEGVNVQIGGSDQWGNITAGTELIRKILQVEGAYGLTFPLLLKSDGTKFGKSEDGAIWLSPAMLSPYKFYQYFFTVPDADVIRFLKILTFLDIEEIAALEGEMKKPGYVPNTAQRRLAEEVTRFVHGDEGLTEALKATEALRPGSETKLDWKTIEGIAEGVPSCSLAYDSVLNLSLVDLSVSSGLFESKSAARRLLKQGGLYLNNNRVDSENKRIEEADIVDGKVLLISAGKKNKNLLWFVWGSETSLKKKPDEDTLMVLSLLRYYGHIFVKCALQWHILIFASIIFWKHELKTCINSVDELRELFENWHPLSSKFYFKLKASQQCLPDDMTSIIKEAINEQLEGEDSFSGVDNAQHVDPVRISDEESVDLVSQSSTSPSRREASNALRSEQSQNHRQVVEDNKIRIGRAGAIKPLVELLSCGCSSKSGQQGGIPLLVEVVGLGSTRGKENAAAALLHLNMVLQEGAVPPLVALSPSGTARAKEKFSLYLLCFVTKCGD 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00088 742 SUPERFAMILY Nucleotidylyl transferase 55 383 - -
Adu06g00088 742 MobiDBLite consensus disorder prediction 611 637 - -
Adu06g00088 742 Hamap Tyrosine--tRNA ligase [tyrS]. 54 483 IPR024107 GO:0004831
Adu06g00088 742 CDD TyrRS_core 86 367 IPR002307 GO:0000166|GO:0004831|GO:0005524|GO:0006437
Adu06g00088 742 Pfam tRNA synthetases class I (W and Y) 84 383 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Adu06g00088 742 SMART s4_6 418 479 IPR002942 GO:0003723
Adu06g00088 742 TIGRFAM tyrS: tyrosine--tRNA ligase 55 479 IPR002307 GO:0000166|GO:0004831|GO:0005524|GO:0006437
Adu06g00088 742 Pfam S4 domain 424 464 IPR002942 GO:0003723
Adu06g00088 742 Gene3D - 284 386 - -
Adu06g00088 742 Gene3D - 387 483 IPR036986 GO:0003723
Adu06g00088 742 Gene3D HUPs 33 283 IPR014729 -
Adu06g00088 742 MobiDBLite consensus disorder prediction 609 642 - -
Adu06g00088 742 Gene3D - 605 741 IPR011989 -
Adu06g00088 742 PRINTS Tyrosyl-tRNA synthetase signature 243 265 IPR002307 GO:0000166|GO:0004831|GO:0005524|GO:0006437
Adu06g00088 742 PRINTS Tyrosyl-tRNA synthetase signature 277 289 IPR002307 GO:0000166|GO:0004831|GO:0005524|GO:0006437
Adu06g00088 742 PRINTS Tyrosyl-tRNA synthetase signature 222 237 IPR002307 GO:0000166|GO:0004831|GO:0005524|GO:0006437
Adu06g00088 742 PRINTS Tyrosyl-tRNA synthetase signature 98 120 IPR002307 GO:0000166|GO:0004831|GO:0005524|GO:0006437
Adu06g00088 742 PANTHER TYROSYL-TRNA SYNTHETASE 54 481 IPR024088 GO:0004831
Adu06g00088 742 SUPERFAMILY ARM repeat 643 728 IPR016024 -
Adu06g00088 742 CDD S4 419 481 - -
Adu06g00088 742 ProSiteProfiles S4 RNA-binding domain profile. 417 484 - -
Adu06g00088 742 SUPERFAMILY Alpha-L RNA-binding motif 384 482 - -
Adu06g00088 742 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 94 104 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00088 Adu-Chr6 1076552 1082331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00088 642 741 U-box Gene Family AT2G23140 26.946 9.36e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00088 K01866 - gmx:100795726 749.969