LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu06g00037	ATGGCTGATGGGGCTGGTGATGATTTGTTTAAAGAACTATGGAGGTTGTGTGCAGGGCCATTAATGGATGTTCCTTGTGTTCAAGACAGAGTTTTCTATTTCCCTCAGGGTCACATTGAATTGTTGCCAGAACCTACAGAACAAGAATTGAGGCAGATGAAGAACCAGAAATCTCCCAAATACGATCTTCCGTCGAAGATCTTATGTCGTGTTATCGATGTTAAGTGTCTGGCCGAGTTGGAAACCGACGAGGTTTATGCTCGAATCACTTTGCAGCCATCTTCAGATAATGATCCTCTAGATCCTAATCCAAGTTGTTCCGAGAAACCGAAACAGAAATTTTACTCATTTTGTAAGACACTGAGTACCTCAGATACTAGCACACATGGAGGATTTTCGGTTCTTCGGAAGCATGCTAATGAATGCTTGCCTCAATTGGATATGACCATGGAAAATCCTACTCAGGAGTTGGTAGCAAAGGATATTCATGGGGTTGAATGGAAGTTTAAGCATATATATAGAGGACATCCGAAGAGGCACCTGCTTACAACTGGCTGGAGTGCATTCGTTGCGGCCAAGAAATTGGTTGTCGGAGATTCTTTTGTTTTTCTAAGGGGAGAGAATGGACAACTGAGAGTAGGCGTTAGGCGTTTGAATCCGCCGCAGAGTCCTACACCTTCCTCGGTGGTGTCGACACAAAACATGCGCCTCGGAGTGATTGTTACTGCAAGCCATTCTGTTATGACTAGTACCATGTTTGTGGTTTATTACAAGCCAAGGACTAGTCAGTTTATTGTTAGTTTAAACAAATATATTGACACGATGAACAATGACTTCAAAATCGGCATGCGATTCAAGATGAGACATGAGGGTGAAGATCCACTTGACAAAAGGTTTTGTGGTACTATAGTTGGAGTTGGAGATGAATCTCAAGAATGGCTAAATTCTCAATGGAGGTCATTGAAGGTTCAATGGGATGAACCAGCAACAATGCAAAGACCAGATAGAGTTTCATGTTGGGAGATTGAACCTCTTGTTACTTCGCCTTTGAATACGATTCAACCGATGGCGAAGGGAAAAAGATCAAGGCATGCTGAGGCTTCATCTTCTGCTGCTTCAGGTAGCAAAGAAAGCCAAGTAGCTACAATATGGCAGCCACCACATTTGAATGGCAATGGAAATTCTTCTCAAGACCCCGAAAACAACAAAGCCGTCGTCCCGGCCGGTCCAGCTGGCGAAGGCCCGGCATGCGACCACAACGAAGACGGGAAGAAGGGCATGGATTGCTGGTTGTTTGGGGTGAATTTGACTAGCAGCTATAGTAATGTTGTTACTCCTTTGGAGAAAGAACTTTGGTGTGAAGCTTCAACTATCCTTCATTGTGGTCCCAAAGAATCTATTATTGTTGGTGCATGTGAGACTGAGAAGGTTCAGAGTCTCAATAACCATTCACTGTCCAACAAGCAGGGCCATGTACCATCCATGAGGACTAGGACTAAGGTGAAAATGGAAGGTGTAGCAGTTGGTCGTGCAATTGACTTGACCACAATAAATGGTTATGATGAACTCATAGTTGAGCTTGAGAAAATGTTTGACATTGAAGGAGAAATTATATCTCAGAAGAAATGGGCTGTTACTTTCACTGATGAAGAAAATGACCTTATGCTTCTTGATGATGATTTATGGCAGGACTTCTGCAAAATGGTGAAGAGGATTTTCATTTGTTCAAAGGAGGATTAA	1740	0.4293	MADGAGDDLFKELWRLCAGPLMDVPCVQDRVFYFPQGHIELLPEPTEQELRQMKNQKSPKYDLPSKILCRVIDVKCLAELETDEVYARITLQPSSDNDPLDPNPSCSEKPKQKFYSFCKTLSTSDTSTHGGFSVLRKHANECLPQLDMTMENPTQELVAKDIHGVEWKFKHIYRGHPKRHLLTTGWSAFVAAKKLVVGDSFVFLRGENGQLRVGVRRLNPPQSPTPSSVVSTQNMRLGVIVTASHSVMTSTMFVVYYKPRTSQFIVSLNKYIDTMNNDFKIGMRFKMRHEGEDPLDKRFCGTIVGVGDESQEWLNSQWRSLKVQWDEPATMQRPDRVSCWEIEPLVTSPLNTIQPMAKGKRSRHAEASSSAASGSKESQVATIWQPPHLNGNGNSSQDPENNKAVVPAGPAGEGPACDHNEDGKKGMDCWLFGVNLTSSYSNVVTPLEKELWCEASTILHCGPKESIIVGACETEKVQSLNNHSLSNKQGHVPSMRTRTKVKMEGVAVGRAIDLTTINGYDELIVELEKMFDIEGEIISQKKWAVTFTDEENDLMLLDDDLWQDFCKMVKRIFICSKED	579

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu06g00037	579	Gene3D	-	492	579	-	-
	Adu06g00037	579	SMART	B3_2	117	219	IPR003340	GO:0003677
	Adu06g00037	579	Pfam	B3 DNA binding domain	117	217	IPR003340	GO:0003677
	Adu06g00037	579	CDD	B3_DNA	116	217	IPR003340	GO:0003677
	Adu06g00037	579	ProSiteProfiles	B3 DNA-binding domain profile.	117	219	IPR003340	GO:0003677
	Adu06g00037	579	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	419	579	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Adu06g00037	579	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	4	387	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Adu06g00037	579	MobiDBLite	consensus disorder prediction	366	402	-	-
	Adu06g00037	579	SUPERFAMILY	CAD & PB1 domains	490	572	-	-
	Adu06g00037	579	SUPERFAMILY	DNA-binding pseudobarrel domain	106	244	IPR015300	-
	Adu06g00037	579	Pfam	AUX/IAA family	488	532	IPR033389	-
	Adu06g00037	579	Pfam	Auxin response factor	243	322	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
	Adu06g00037	579	Gene3D	-	278	349	-	-
	Adu06g00037	579	ProSiteProfiles	PB1 domain profile.	496	577	IPR000270	GO:0005515
	Adu06g00037	579	PANTHER	AUXIN RESPONSE FACTOR 11	419	579	-	-
	Adu06g00037	579	PANTHER	AUXIN RESPONSE FACTOR 11	4	387	-	-
	Adu06g00037	579	MobiDBLite	consensus disorder prediction	353	419	-	-
	Adu06g00037	579	Gene3D	-	115	218	IPR015300	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu06g00037	Adu-Chr6	544129	548963	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu06g00037	7	574	B3 DNA Binding Superfamily	AT2G46530	51.111	0.0	564

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Adu06g00037		B3	7.2e-22	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu06g00037	K14486		-	gmx:100795763	714.916