Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00013 ATGGCGGCATCGCGGCGGTTGCGGGAACTGCAATCCCAGGCGGCGAACAAGATCTGCGTCGACTGCTCTCAGAAGAACCCACAGTGGGCCTCCGTCTCCTACGGCGTATTCATGTGCCTCGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTCCACATCTCCTTCGTCAGATCCGTCACCATGGACTCCTGGTCCGAAATCCAGATCAAGAAGATGGAGGCTGGCGGCAACGACGCCCTCAACGCCTTCCTCTCTCAGTACGGTATTCCAAAGGAAACTGATATTGTCACAAAGTACAACACCAACGCTGCCAAAATCTACCGCGACCGCATCCAGGCCCTCGCCGAAGGCCGTCCCTGGCGCGATCCTCCCGTTGTTAAGGAGGATCTCCGCTCCTCTGCCGGGAAACCTCCCTTGTCGCACACCGGCGGTGGCGGTGGTGGTGGAGGTTGGGATAGCTGGGATAACGATGACGGTTTTGGATCTCGCAATGATATCCGGCGGAATCAGTCGACTGGAGATGTTAGACGGTTCTCTGGTGGCGGCGCCGGTGTAGGTGGTGTGCCGGCGAGGTCGAAATCGACGGAGAATATGTACACGCAGTCGGAATTGGAGGCCTCCGCCGCGAACAAGGAGAGCTTCTTTGCTCGGAAGATGGCGGAGAATGACACGAGGCCTGAGGGGCTCCCGCCGTCGCAGGGCGGAAAGTACGTCGGGTTCGGATCGAGCCCTGCCCCTTCCCAGAGGAACATGAACCCCCAAAACGACTATCTCTCTGTCGTTTCGCAGGGGATTGGTAAATTATCACTGGTTGCTGCATCTGCCGCTCAATCTGCTGCTAGTGTTGTTCAGGCAAGCACCAAGGAAATCACTGCTAAGGTAAAGGATGGTGGGTATGATCACAAGGTCAATGAAACTGTCAATGTTGTTACTCAGAAGACATCTGAGATTGGCCAAAGGACATGGGGCATTATGAAAGGTGTCATGGCATTGGCTACACAGAAGGTGGAGGAGTTCGCTAGAGATAACCCAAATTGGAAGCCTGAAAATTGGCAAGCAAATGATATAGATAGAAATGGTTCCTATCAAGAGTACAATCAAGAGAATAGAGGCTGGAATTCTTCTTCTACCAGGGGAGGACGACCATCATCGGGTAGTCAATCTAATAAGTCTAGTTCTTGGGATGATTGGGATGAGCAAGATTCTAGGAAGCAAGTACCAGCTCGTCCATCTTCACGTGAACAATATGGTGGTACCAAAAACACAAGCTCTTGGGATGATTGGGACCAAAATGATACTAGGAAGCAGGGACCAGCTAAGGTATCAGCTTCTCCATCACCAGTAGCACAGTATGTTGGTACTCACAACAGAAGCTCTTGGGATGATTGGGACCAAAAAGATACTAGGAAGCAAGAACCAGCTAAAGTATCTGCTTCTCCGTCATCAGTTGGACAGTATGGAGGTACTCAAAACACCTACACCAGCTCCTGGGATGATTGGGACCAAAAAGATACTAGGAAGGAAGAACCAGCTAAAGGATCAACTCCTCAGAAAAGTGATGGTTGGGCTGGCTGGGATGATTCTAAAGATGATGGATTTGATAATTTCTATGGGAGTTCAGCTAATAATAAAGCTGCTGGTCATAATGGAAAGGCAGATTCAGCCTGGACGGGAGGAGGCTTTCTCTGA 1689 0.5157 MAASRRLRELQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDALNAFLSQYGIPKETDIVTKYNTNAAKIYRDRIQALAEGRPWRDPPVVKEDLRSSAGKPPLSHTGGGGGGGGWDSWDNDDGFGSRNDIRRNQSTGDVRRFSGGGAGVGGVPARSKSTENMYTQSELEASAANKESFFARKMAENDTRPEGLPPSQGGKYVGFGSSPAPSQRNMNPQNDYLSVVSQGIGKLSLVAASAAQSAASVVQASTKEITAKVKDGGYDHKVNETVNVVTQKTSEIGQRTWGIMKGVMALATQKVEEFARDNPNWKPENWQANDIDRNGSYQEYNQENRGWNSSSTRGGRPSSGSQSNKSSSWDDWDEQDSRKQVPARPSSREQYGGTKNTSSWDDWDQNDTRKQGPAKVSASPSPVAQYVGTHNRSSWDDWDQKDTRKQEPAKVSASPSSVGQYGGTQNTYTSSWDDWDQKDTRKEEPAKGSTPQKSDGWAGWDDSKDDGFDNFYGSSANNKAAGHNGKADSAWTGGGFL 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00013 562 MobiDBLite consensus disorder prediction 459 473 - -
Adu06g00013 562 MobiDBLite consensus disorder prediction 118 199 - -
Adu06g00013 562 CDD ArfGap_ArfGap1 3 117 - -
Adu06g00013 562 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Adu06g00013 562 SUPERFAMILY ArfGap/RecO-like zinc finger 5 115 IPR037278 -
Adu06g00013 562 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 431 - -
Adu06g00013 562 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 488 562 - -
Adu06g00013 562 MobiDBLite consensus disorder prediction 394 408 - -
Adu06g00013 562 Pfam Putative GTPase activating protein for Arf 5 101 IPR001164 GO:0005096
Adu06g00013 562 MobiDBLite consensus disorder prediction 499 514 - -
Adu06g00013 562 MobiDBLite consensus disorder prediction 474 498 - -
Adu06g00013 562 MobiDBLite consensus disorder prediction 366 562 - -
Adu06g00013 562 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Adu06g00013 562 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Adu06g00013 562 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Adu06g00013 562 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Adu06g00013 562 MobiDBLite consensus disorder prediction 366 393 - -
Adu06g00013 562 MobiDBLite consensus disorder prediction 158 172 - -
Adu06g00013 562 MobiDBLite consensus disorder prediction 221 250 - -
Adu06g00013 562 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 488 562 IPR044519 GO:0005096|GO:0016192
Adu06g00013 562 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 431 IPR044519 GO:0005096|GO:0016192
Adu06g00013 562 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Adu06g00013 562 MobiDBLite consensus disorder prediction 412 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00013 Adu-Chr6 164332 167965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00013 5 138 C2H2 Transcription Factor Family AT4G21160 38.971 8.84e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00013 K12492 - gmx:100801306 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g00013 06 164332 167965 Adu06g00013 06 164332 167965 ECH