Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03592 ATGCAGTCTCTACTTTCCAAGAATGTCATTAAGATTGCTGATCAAGAAAACTGTCCACCAAATGACTCATCTCAAACCAGTATACTCCAAAATTGGGATGCCAGTGTGATGTTAAATAATCTTTCCTTCTTGGAAAAAAAGGTTCATCAACTTCAGGAGTTAGTGTGCTTGATTGTTAGTAAAAAGGGCCAAACTTTTCGACAGCCTAATGAACTGTTAACTCAGGAACAACAGCTCATTACTGCTGATCTTACATCAATTATTGTTCAGTTGATCTCTTCTGCAGGTAGTCTTCTCCCTTCTGCCAGACATACCCTTACAAATACCAGTCCATTGGTTCAACAGCTTTGCCAGCTTCAGGGGATTACGGTTCCTTTTGCGTCCGGCTCAGGCCAAAGTAGTGTTCAACCACAAAATAATGGGGCAGATAAATTATCTGAGAGCTCACTGAAGAATGGTCTACCAAATAATTGTGATCTGGAGCAAAAGTACAATGTGGAAGAACATGAATTGAAGGATGAGGAAGATGCTGATGATGGAGAAAACCTCCTGCCTGGTTCCTATGAGATTTTACAATTAGAAAAAGAAGAAATCCTTGCCCCACATACACATTTCTGCACAATTTGTGGAAAGGGATTCAAGAGAGATGCAAATCTCCGAATGCACATGCGAGGCCATGGTGATGAGTACAAAACTGCAGCTGCTCTTGCAAAACCTCATAAAGAATCTGAGTCACAACCTAAGCTTATCAAGAGGTATTCTTGCCCCTATGCTGGCTGCAAGCGTAACAAGGATCACAAAAAATTTCAACCTCTGAAGACAATATTGTGTGTCAAAAATCATTACAAAAGAACACACTGTGACAAGAATTACACTTGCAGCAGATGCCACATAAAGAAGTTTTCAGTCATGGCGGATCTTAAAACTCATGAAAAGCACTGTGGCAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAGGACAAGCTTTTTGGACATATTGCTCTTTTCCAAGGCCATACACCGGCCATTCCCATGGAAGACAATAAAAGAACAACAGGCCTTCCAGACCAAGATAATAGCAAAGCAGAAGTTATGAGCTTCAGTTCTGGATTAAATCCTTCAACTGAAAATGGAGTTCAAAATGTCATGGATGTAAAAGGAAACATTGATGATCCTATTACTTGTTTCTCTCCATTGAACTTTGAAGCTAACTTTGGTGGCTTTAATGAATTCACTCAACATCAATTTGATGATGGCTCGGAAGGTTCTTTCTCGTTTCTCATCCCTGGATCTTTCAAATCTGGAGAAGTATCAAGCTCTGATAATGTGGTTTGA 1347 0.3994 MQSLLSKNVIKIADQENCPPNDSSQTSILQNWDASVMLNNLSFLEKKVHQLQELVCLIVSKKGQTFRQPNELLTQEQQLITADLTSIIVQLISSAGSLLPSARHTLTNTSPLVQQLCQLQGITVPFASGSGQSSVQPQNNGADKLSESSLKNGLPNNCDLEQKYNVEEHELKDEEDADDGENLLPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPHKESESQPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKNYTCSRCHIKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPMEDNKRTTGLPDQDNSKAEVMSFSSGLNPSTENGVQNVMDVKGNIDDPITCFSPLNFEANFGGFNEFTQHQFDDGSEGSFSFLIPGSFKSGEVSSSDNVV 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03592 448 ProSitePatterns Zinc finger C2H2 type domain signature. 206 226 IPR013087 -
Adu05g03592 448 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 21 435 IPR044300 GO:0010044|GO:0010447
Adu05g03592 448 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 231 IPR013087 -
Adu05g03592 448 SUPERFAMILY beta-beta-alpha zinc fingers 202 230 IPR036236 -
Adu05g03592 448 MobiDBLite consensus disorder prediction 129 158 - -
Adu05g03592 448 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 21 435 - -
Adu05g03592 448 SMART c2h2final6 253 286 IPR013087 -
Adu05g03592 448 SMART c2h2final6 204 226 IPR013087 -
Adu05g03592 448 SMART c2h2final6 291 313 IPR013087 -
Adu05g03592 448 Gene3D Classic Zinc Finger 188 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03592 Adu-Chr5 108262882 108264228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03592 171 432 C2H2 Transcription Factor Family AT1G34370 69.818 1.65e-131 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu05g03592 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03592 - - gmx:100170687 659.448