Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03580 ATGATTGAGCCAAACTTCGTCGACGACGTAGACTGCGGCAGCTTCTTCGACCACATTGACGACCTCCTCGACTTCCCCGCCGACGACGCTGCCACCGCCGACGCCTCCTTGCCCGTCGCTGCCGCCTGCGCCGGAAACATTGAAACGCCGGCGAGCTTCTGGTCTTCCGAGTCCAACAGCGGTCTGCCGGCCACAGATACAGCCTTTCCCCGCGGTGACGCCGTGACGGACCTCTCGGCGGAGATTTCCGTTCCGTATGAAGACATTGTGCAGTTGGAATGGTTATCCACTTTTGTGGAGGACTCTTTCTCCGGTAGGAGCCTTACCATGAAGAAGGTGGAGCTCCCCACCACCATCACCACAATCAAGGAGGATTTGACTCGTTCACAATTCCGGACATCAAGTCCAGTTTCTGTCCTAGAGAGCAGCAGCTCTTGCTCCAGGGAGAAGGTTGTGGCTCAATGCCCGGAGATTTATATCCCAGTGGTGCCTTGTGGACGTGCGCGAAGCAAGCGGCAGCGCCCGTCGAGCTTCAAGGCACATCCGGTGATGCAACTCATCTCCCCTGCTTCCTCTGTTGGTGAGAACACACAGCCTAATGTCATTCTTAAGGCTTCTTCAGATTCTGAGAATTTCGCGGAGTCTCATCCTGCAATCAAGTTAGCAAAGCAAGCTTCTGGAGAGCACAAGAAGAAAAAGAAAACCAAAGCACCTAATCCTTTAACTGAAGATGATGATCATGATACTAACCAGAATAGTGCGGCAGCTAGGAAATGCATGCACTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCCTGTGGTGTTCGCTACAAGTCGGGCCGCCTCTTCCCCGAATACCGGCCTGCTGCCAGTCCAACGTTCTGCCCTGCCGTGCACTCCAATTCACACAAGAAGGTCCTTGAAATGAGAAACAAATTTGGCTTCTCAACTGATTCAGCTGCTTCTCCTGAACTCATTCCAAACACTTCAAGACTTGGATTGGAATACATGTGA 1047 0.5291 MIEPNFVDDVDCGSFFDHIDDLLDFPADDAATADASLPVAAACAGNIETPASFWSSESNSGLPATDTAFPRGDAVTDLSAEISVPYEDIVQLEWLSTFVEDSFSGRSLTMKKVELPTTITTIKEDLTRSQFRTSSPVSVLESSSSCSREKVVAQCPEIYIPVVPCGRARSKRQRPSSFKAHPVMQLISPASSVGENTQPNVILKASSDSENFAESHPAIKLAKQASGEHKKKKKTKAPNPLTEDDDHDTNQNSAAARKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPAVHSNSHKKVLEMRNKFGFSTDSAASPELIPNTSRLGLEYM 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03580 348 PANTHER GATA TRANSCRIPTION FACTOR 8 1 348 - -
Adu05g03580 348 MobiDBLite consensus disorder prediction 237 252 - -
Adu05g03580 348 PIRSF Txn_fac_GATA_plant 1 340 IPR016679 GO:0003677|GO:0005634|GO:0045893
Adu05g03580 348 MobiDBLite consensus disorder prediction 222 252 - -
Adu05g03580 348 CDD ZnF_GATA 258 315 IPR000679 GO:0006355|GO:0043565
Adu05g03580 348 ProSitePatterns GATA-type zinc finger domain. 259 284 IPR000679 GO:0006355|GO:0043565
Adu05g03580 348 SMART GATA_3 253 303 IPR000679 GO:0006355|GO:0043565
Adu05g03580 348 ProSiteProfiles GATA-type zinc finger domain profile. 253 289 IPR000679 GO:0006355|GO:0043565
Adu05g03580 348 PANTHER GATA TRANSCRIPTION FACTOR 1 348 - -
Adu05g03580 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 256 316 - -
Adu05g03580 348 Pfam GATA zinc finger 259 292 IPR000679 GO:0006355|GO:0043565
Adu05g03580 348 Gene3D - 253 303 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03580 Adu-Chr5 108175210 108179268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03580 19 323 C2C2-Gata Transcription Factor Family AT4G32890 35.505 9.87e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Adu05g03580 GATA 5.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03580 - - gmx:100815693 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g02148 06 89280543 89282098 Adu05g03580 05 108175210 108179268 PCT