Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03468 ATGGTGGTTGTGGAGGAGAGAGAAGAAGAAGAGGTTGGAGTTGTTGTTGATGATGAACGGAGCTCCGGCGAGCGTGACATCGACCAGGCATTGGTTGCTTTGAAAAGGGGTTCTCAATTACTTAAATATGGTCGTAAGGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCCAATGATGAATCAACTTTAATCTGGATTTCTAGTAGTGAAGAAAGACGTCTGAAGCTGTCTTCTGTCTCAAGAATTATTCCTGGGCAAAGAACTGCTGTTTTTCAACGTTACCTGCGTCCCGAGAAGGACTATTTATCTTTTTCACTAATTTATAATAACGGAAAGCGGTCCCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGAGGCGTGGATTGCTGGTCTTAAAGCACTGATAACTTCTGGTCGTGGTGGTCGATCCAAAATTGATGGATGGAGTGACGGTGGCCTCAATTTTGATGATAGTAGAGATCTGACATCAAATAGTGCAAGTGAAAGTTCAGCGAGTACTTCCCTAGACATCAGTTCTCCTGACATTCCTGTGAGTCTTCTGAACACTTCACCAAAGACATTCCGACCTGACAATACCCTGAATTCTGAGAAATCACATGCACCATCAGACCCAATAAATATGCAAGTAAAAGGATCTAGTTCAGATACTTTTCGTGTTAGTGTTTCAAGTGCTCCTAGCACATCCAGTCATGGATCTGCACCAGATGACTATGAAGCTCTAGGGGATGTATACATATGGGGTGAGGTTATCTGTGAAAACGTTGTGAAAGTTGGTGCTGATAAAAGTATCAATTATTTCAGTCCGAGGGCAGATGTGCTTCTACCAAGACCACTTGAATCCAATGTAGTTTTAGATGTGCATCATATAGCATGTGGCGTTAGACATGCTTCTCTAGTCACCAGACAAGGTGAAGTTTTTACATGGGGAGAAGAATCAGGAGGACGCCTTGGCCATGGTGTTGGGAAGAACGTGGTTCAACCTCGCCTTGTCGAAGCATTAGCTTCTTCAACCATTGATTTTGTTGCCTGTGGAGAGTTCCATTCTTGTGCTGTAACAATGGCCGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCACTGATGTTAGTCATTGGATACCAAAGAGGATTGCTGGTCCATTAGAGGGACTTCAAGTTGCTTTCGTCGCTTGTGGTCCATGGCACACGGCCTTGATAACTTCTACTGGGCAACTCTTTACATTTGGTGACGGAACGTTCGGTGTCTTGGGCCATGGAGACAGGGAAAATGTTTCATATCCTAGAGAAGTAGACTCCTTATCAGGGTTGAGGACCATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCGGTTGTAGAGGTTATTGTGACACAATCCAGTTCAAGTATATCATCTGGTAAATTGTTTACCTGGGGTGATGGAGACAAAAATCGCCTAGGACATGGGGATAAGGAGGCACGACTTAAACCAACTTGTGTTTCTGCACTTATCGACTACAATTTTCATAAAATTGCATGCGGGCACAGTTTGACAGTGGGTCTGACAACATCTGGACGTGTTTTTACGATGGGAAGCACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGGAAGCTTCCATGCTTGGTCGAAGACAAGATTTCCGTGGAATCGATTGATGAAATTGCATGTGGTGCATATCATGTTGCCGTTTTAACATCAAAAAATGAAGTTTTTACTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGAGATGTCGAAGATCGAAAAATACCTACTTTGGTTGAAGCATTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCCGCTGCCATATGCCTTCATAAGTGGGTATCCGGTGCCGAACAGTCTCAATGCTCGGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAATTGTTATAATTGTGGACTTGTACATTGCCATTCATGCAGCTCACGGAAAGCATTAAGGGCGGCCTTGGCTCCAAATCCTGGCAAGCCTTATCGAGTTTGTGATTCTTGTTTTGCAAAACTGAACAAGGTTGCAGAAGCTAGCAACAGTAATAGGAGAAATACTCTGCCTCGTCTGTCAGGTGAAAACAAAGACAGGTTGGAAAAATCAGACCTGAAATTGTCGAAAGCACTGGTTCCTTCCAATATGGATTTGATAAAGCAGCTAGACAGTAAGGCAGCCAAACAAGGGAAGAAAGCAGATACATTCTCGCTTGTTCGCACCTCACAAGCACCTTCATTGCTACAGTTGAAAGATGTTGTCTTGGCAACTGCTGTTGATCTGAAGCGTACAGCGCCTAGACCAGTGGTTGCACCTTCTGGAGTAAGTTCCAGGTCTGTGTCACCTTTCTCTAGAAGACCAAGCCCCCCTCGATCGGCTACACCTATTCCAACAACATCAGGACTTTCCTTCTCCAAGAGCATTGCTGATAGTTTGAAGAAAACAAATGAACTTTTAAATCAGGAAGTGCAAAAGTTACGTTCTCAGGTTGAAAGCCTGAAACAGAGATGTGAATTGCAAGAATTAGAGCTTCAGCGGTCAAACAAAAAGACTCAAGATGCTATGGCAATGGCTGCTGAGGAATCTGCTAAATGTAAAGCTGCAAAAGAAGTTATAAAGTCACTTACGGCACAGCTCAAAGGTTTTGCTGAGAAGCTCCCACCGGGAGCGTATGATGCCGAGAACATCAAACCAGCTTACCTACCAAACAGTATTGAGCCAAATGGTATCCACCTTCCAGATTCAAATGGTGGGCACCACTCGAGGGCCGAATCAATCAGTGGCTCTAGTTTGGCCTCTACAGCATTCGAATCCTCTCTGCTCAATAGAACTGTGGGGAACTTTCCAGGAACCTATGGATCTACTCTGGACCAGCAAAACCGAGCCAGTGTGACGTCCAATGGTTCAGACAACTATCCAGATGCTAGATTGTCAAATGGTGGCGGCAGCATGTCTGATACTGTTGACGGTAGGGATTCGGGGAATTTCCATGATGACGAGAGTGGTTTAAGATCAAGGAATGCAGGACTGTCTACTAATAGCAATCAGATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTATATAACACTTGTTGCGCTGCGCGACGGAACAAGAGATTTGAAGCGAGTTCGTTTCAGCCGGAGAAGATTCGGAGAGCATCAAGCAGAGACTTGGTGGTCAGAGAACCGGGACAAGGTATACGAAAGGTACAATGTTCGTAGCGCAGACAAGTCTTCAAACCAAGCGGGGGCGCCGCATAGGACAGAAGGTGCTGGTTCTCTTGTTTCCCAATCATAG 3390 0.4478 MVVVEEREEEEVGVVVDDERSSGERDIDQALVALKRGSQLLKYGRKGKPKFCPFRLSNDESTLIWISSSEERRLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEAWIAGLKALITSGRGGRSKIDGWSDGGLNFDDSRDLTSNSASESSASTSLDISSPDIPVSLLNTSPKTFRPDNTLNSEKSHAPSDPINMQVKGSSSDTFRVSVSSAPSTSSHGSAPDDYEALGDVYIWGEVICENVVKVGADKSINYFSPRADVLLPRPLESNVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALASSTIDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVDSLSGLRTIAVACGVWHTAAVVEVIVTQSSSSISSGKLFTWGDGDKNRLGHGDKEARLKPTCVSALIDYNFHKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVEDKISVESIDEIACGAYHVAVLTSKNEVFTWGKGANGRLGHGDVEDRKIPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFAKLNKVAEASNSNRRNTLPRLSGENKDRLEKSDLKLSKALVPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQAPSLLQLKDVVLATAVDLKRTAPRPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVQKLRSQVESLKQRCELQELELQRSNKKTQDAMAMAAEESAKCKAAKEVIKSLTAQLKGFAEKLPPGAYDAENIKPAYLPNSIEPNGIHLPDSNGGHHSRAESISGSSLASTAFESSLLNRTVGNFPGTYGSTLDQQNRASVTSNGSDNYPDARLSNGGGSMSDTVDGRDSGNFHDDESGLRSRNAGLSTNSNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSADKSSNQAGAPHRTEGAGSLVSQS 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03468 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 311 362 IPR000408 -
Adu05g03468 1129 Coils Coil 886 906 - -
Adu05g03468 1129 CDD FYVE_like_SF 646 699 - -
Adu05g03468 1129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 710 IPR013083 -
Adu05g03468 1129 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 404 414 IPR000408 -
Adu05g03468 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 481 532 IPR000408 -
Adu05g03468 1129 MobiDBLite consensus disorder prediction 979 1018 - -
Adu05g03468 1129 MobiDBLite consensus disorder prediction 796 830 - -
Adu05g03468 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 585 636 IPR000408 -
Adu05g03468 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 480 527 IPR000408 -
Adu05g03468 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 311 359 IPR000408 -
Adu05g03468 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 418 466 IPR000408 -
Adu05g03468 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 586 633 IPR000408 -
Adu05g03468 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 363 414 IPR000408 -
Adu05g03468 1129 Pfam Regulator of chromosome condensation (RCC1) repeat 532 581 IPR000408 -
Adu05g03468 1129 Coils Coil 837 878 - -
Adu05g03468 1129 MobiDBLite consensus disorder prediction 1104 1129 - -
Adu05g03468 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 533 584 IPR000408 -
Adu05g03468 1129 MobiDBLite consensus disorder prediction 979 1039 - -
Adu05g03468 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 418 469 IPR000408 -
Adu05g03468 1129 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 28 1109 - -
Adu05g03468 1129 Pfam FYVE zinc finger 637 703 IPR000306 GO:0046872
Adu05g03468 1129 CDD PH_PLC_plant-like 25 137 - -
Adu05g03468 1129 Gene3D - 200 469 IPR009091 -
Adu05g03468 1129 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 641 703 IPR017455 -
Adu05g03468 1129 MobiDBLite consensus disorder prediction 935 954 - -
Adu05g03468 1129 ProSiteProfiles BRX domain profile. 1047 1102 IPR013591 -
Adu05g03468 1129 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 28 1109 - -
Adu05g03468 1129 Coils Coil 1126 1129 - -
Adu05g03468 1129 MobiDBLite consensus disorder prediction 183 219 - -
Adu05g03468 1129 Pfam Transcription factor BRX N-terminal domain 888 923 IPR027988 -
Adu05g03468 1129 SUPERFAMILY RCC1/BLIP-II 249 638 IPR009091 -
Adu05g03468 1129 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 363 417 IPR000408 -
Adu05g03468 1129 SUPERFAMILY FYVE/PHD zinc finger 637 714 IPR011011 -
Adu05g03468 1129 Gene3D - 26 141 IPR011993 -
Adu05g03468 1129 PRINTS Chromosome condensation regulator RCC1 signature 313 329 IPR000408 -
Adu05g03468 1129 PRINTS Chromosome condensation regulator RCC1 signature 363 379 IPR000408 -
Adu05g03468 1129 PRINTS Chromosome condensation regulator RCC1 signature 404 420 IPR000408 -
Adu05g03468 1129 PRINTS Chromosome condensation regulator RCC1 signature 420 434 IPR000408 -
Adu05g03468 1129 PRINTS Chromosome condensation regulator RCC1 signature 522 540 IPR000408 -
Adu05g03468 1129 PRINTS Chromosome condensation regulator RCC1 signature 580 601 IPR000408 -
Adu05g03468 1129 SMART fyve_4 635 704 IPR000306 GO:0046872
Adu05g03468 1129 Gene3D - 470 633 IPR009091 -
Adu05g03468 1129 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 456 466 IPR000408 -
Adu05g03468 1129 Pfam Pleckstrin homology domain 29 136 IPR001849 -
Adu05g03468 1129 Pfam Transcription factor regulating root and shoot growth via Pin3 1046 1101 IPR013591 -
Adu05g03468 1129 SUPERFAMILY PH domain-like 27 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03468 Adu-Chr5 107180466 107187911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03468 1048 1115 Major Intrinsic Protein MIP AT1G31880 50.000 6.87e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03468 - - adu:107490830 2130.91