Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03451 ATGGAAGCTCAGAAGATTCTCCAGCGCAAGGGTCAGGCATCTACTGCCATCGATGCTGATCTCGAGAAACTAAGAGTAGCTGAAACTAAGCCCAGTCTTCTAGTTAAGGCTTCACAGTTGAAACGAGAGCAGCCTGAGATTAGTGCAACAGAACAGATTGTTCAACAAGAGAAGGAAATGATTGAGAACTTGTCAGATAGAAAGACCCTTATGTCTGTTCGTGAATTGGCTAAGGGGATTACTTATACAGAACCATTGCTTACCGGGTGGAAGCCACCTTTGCAGGTGAGAAGGATGTCTAAAAAAGAATGTGATTTGATTCGCAAACAGTGGCATATAATAGTTGATGGTGAAGATATCCCACCTCCAATTAAGAATTTTAAGGATATGCGGTTTCCTGAGCCGGTTTTGAAGAAATTAAAAGCTAAGGGAATTGTGCAACCGACACCCATTCAGGTGCAAGGCCTTCCTGTTATCTTATCTGGGAGGGATATGATTGGGATTGCTTTCACAGGCTCAGGAAAAACCCTGGTATTTGTGCTGCCAATGATCATGGTAGCAATGCAGGAGGAAATCATGATGCCTATTGCTCCTGGAGAAGGTCCATTCGGTTTGATAATTTGTCCTTCACGAGAACTGGCTCGGCAGACTTATGAAGTGGTTGAACAGTTCTTGATACCTTTGAAGGAAGCTGGATATCCGGAGCTCAGGCCTTTGCTATGCATCGGTGGAGTGGATATGAGATCACAGCTTGAGATTGTGAAGAAGGGTGTCCATATTGTTGTTGCCACTCCTGGTAGATTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAATTGCAGGTATTTAACATTAGATGAGGCTGATCGATTGGTAGATTTAGGATTTGAAGACGACATAAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAGACTCTGTTATTTTCTGCCACAATGCCTACAAAAATTCAGAACTTCGCCAGAAGTGCTTTGGTGAAACCTATTATTGTCAATGTGGGACGGGCTGGGGCAGCAAATCTTGATGTGATCCAAGAGGTAGAGTATGTAAAGCAAGAGGCGAAAATCGTTTATCTCCTTGAGTGCCTTCAAAAAACCCCACCTCCTGTTCTGATATTCTGTGAGAATAAGGCTGATGTCGATGACATTCATGAATATCTTCTCTTGAAAGGAGTGGAAGCAGTGGCTATTCATGGAGGCAAGGATCAGGAAGAGAGAGAGAATGCCATTTCGGCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTAGCAACTGATGTTGCATCCAAAGGTTTGGATTTTCCAGATATTCAGCATGTCATCAACTACGACATGCCAGCTGAAATTGAAAATTATGTCCATAGGATTGGTCGAACAGGAAGATGTGGCAAGACCGGTATAGCTACAACATTCATTAACAAGAACCAGAGTGAGACAACATTGCTTGATTTGAAGCACCTCTTGCAAGAAGCAAAACAAAGAATACCTCCAGTTTTGGCTGAGCTGAATGATCCAATGGAAGACAATGATGCAATCACAGACATAAGTGGGGTGAAGGGATGTGCTTACTGTGGTGGTCTTGGTCATCGTATCCGTGATTGTCCCAAATTGGAACATCAGAAGAGCATGGCAATTGCAAATAATAGAAAGGATTATTTTGGTTCTGGAGGTTACAGGGGTGAAATTTGA 1713 0.4262 MEAQKILQRKGQASTAIDADLEKLRVAETKPSLLVKASQLKREQPEISATEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTEPLLTGWKPPLQVRRMSKKECDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPVLKKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIAPGEGPFGLIICPSRELARQTYEVVEQFLIPLKEAGYPELRPLLCIGGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEERENAISAFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDNDAITDISGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRKDYFGSGGYRGEI 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03451 570 PANTHER BNAA06G38640D PROTEIN 1 550 - -
Adu05g03451 570 Gene3D - 92 344 IPR027417 -
Adu05g03451 570 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 511 IPR001650 -
Adu05g03451 570 CDD SF2_C_DEAD 352 480 - -
Adu05g03451 570 SMART c2hcfinal6 528 544 IPR001878 GO:0003676|GO:0008270
Adu05g03451 570 Gene3D - 350 512 IPR027417 -
Adu05g03451 570 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Adu05g03451 570 Pfam Helicase conserved C-terminal domain 364 471 IPR001650 -
Adu05g03451 570 Pfam DEAD/DEAH box helicase 149 328 IPR011545 GO:0003676|GO:0005524
Adu05g03451 570 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 340 IPR014001 -
Adu05g03451 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 486 IPR027417 -
Adu05g03451 570 CDD DEADc_DDX41 136 341 IPR044113 GO:0000398|GO:0003724|GO:0005524
Adu05g03451 570 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 550 - -
Adu05g03451 570 SUPERFAMILY Retrovirus zinc finger-like domains 528 549 IPR036875 GO:0003676|GO:0008270
Adu05g03451 570 Coils Coil 47 67 - -
Adu05g03451 570 Pfam Zinc knuckle 528 544 IPR001878 GO:0003676|GO:0008270
Adu05g03451 570 Coils Coil 482 502 - -
Adu05g03451 570 SMART helicmild6 390 471 IPR001650 -
Adu05g03451 570 SMART ultradead3 144 355 IPR014001 -
Adu05g03451 570 ProSiteProfiles Zinc finger CCHC-type profile. 529 544 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03451 Adu-Chr5 106951436 106953148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03451 113 510 Eukaryotic Initiation Factors Gene Family AT3G19760 30.769 2.47e-56 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03451 K13116 - gmx:100814127 1097.8