Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03347 ATGGGGAAAACACCATGCTGTGATAAACATGGAGTGAGAAGAGGTGCTTGGACTCCTGAAGAAGATGAAGCATTGATTGAATACATTAAGAAACATGGCCATGGAAGTTGGAGAACAGTTCCAAAGCAAGCAGGTCTCCTGAGATGTGGCAAAAGCTGTCGTCTAAGGTGGATAAATTACCTTCGCCCTGACATAAAACGTGGTCCATTTACAACTGAAGAAGAGGGTACAATTATTCAGCTTCATGGCATGCTTGGAAACAGGTGGGCTGCTATAGCATCCCATCTTCCAGGAAGAACAGATAATGAAATCAAGAACTTTTGGAACACGCAACTGAAGAAGCGCCTGCCTCGATCCTCTTTCGTGCCTGATCATAACAATGTTAAATCTGAGTCTCCTTCTACACGCCATATGGTGCAATGGGAAAGTGCAAGAGTTGAAGCTGAGGCAAGGTTGTCAATGGAATCCTCATTGCATAATTCATTCTCAGCAAGTGAATCATACCAGGATCACTTTCTCCAACTCTGGCATTCTGAGGTTGGACAGTCTTTTCGCGTGATCAAGGCGAAAGAAGAAGGAGCAGTGGTGACTCAGAACCTTGTGTCACAAGCATCATTATCTTCGTCCAAATTGGAGTCGAGTTCTGAAGTCTCATTGAAGTTGAAGAACACAGAAAGCAGTTTCTTTGCTGACATAACACATGAACAACAAAAAAGTAGCTCTAAGGCAAAGCTTGAAGATGGTGGCACGGCCGAGTCGAGTTTAGGCTATTATGAATTTCTTGATACTTCTGATTCTTCAATAAATCATCTGCTAGATGTGCCTGATGGTGAAGTGTTGTTCTTAGGACAGAATGACAATTTCCTCAATACCCTTGATGGTAGATGTGAGTAA 894 0.4284 MGKTPCCDKHGVRRGAWTPEEDEALIEYIKKHGHGSWRTVPKQAGLLRCGKSCRLRWINYLRPDIKRGPFTTEEEGTIIQLHGMLGNRWAAIASHLPGRTDNEIKNFWNTQLKKRLPRSSFVPDHNNVKSESPSTRHMVQWESARVEAEARLSMESSLHNSFSASESYQDHFLQLWHSEVGQSFRVIKAKEEGAVVTQNLVSQASLSSSKLESSSEVSLKLKNTESSFFADITHEQQKSSSKAKLEDGGTAESSLGYYEFLDTSDSSINHLLDVPDGEVLFLGQNDNFLNTLDGRCE 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03347 297 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Adu05g03347 297 MobiDBLite consensus disorder prediction 119 139 - -
Adu05g03347 297 CDD SANT 69 110 IPR001005 -
Adu05g03347 297 CDD SANT 16 61 IPR001005 -
Adu05g03347 297 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Adu05g03347 297 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 283 - -
Adu05g03347 297 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Adu05g03347 297 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Adu05g03347 297 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Adu05g03347 297 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 283 - -
Adu05g03347 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Adu05g03347 297 MobiDBLite consensus disorder prediction 123 139 - -
Adu05g03347 297 Gene3D - 14 66 - -
Adu05g03347 297 Gene3D - 69 116 - -
Adu05g03347 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Adu05g03347 297 SMART sant 66 114 IPR001005 -
Adu05g03347 297 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03347 Adu-Chr5 105920417 105921825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03347 1 285 MYB Transcription Factor Family AT3G61250 52.508 1.71e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu05g03347 Myb_DNA-binding 4.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03347 K09422 - gmx:100807142 397.512