Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03345 ATGGGTGTCAAGAATTTGTGGGACATCCTCGAATCATGCAAGAAAACGGTTCCGCTTCACCATCTCCAGAACAAGAGGGTGTGCGTGGACCTATCGTGCTGGATGGTGCAGCTTCAGAATGTGAGCAAGTCACACGCTTGTATGAAGGAGAAGGTTTACCTCAGAGGCCTCTTTCATCGCCTCAGAGCTCTCATTGCTCTCAATTGCAACGTTGTTTTCGTCGCAGACGGGTCAATTCCTGCCATCAAATTATCAACTTATAGGCGTCGCTTGAACATGGGGAAAGAGGTGGAACATAATGAAACTAACTCACAGCAAGTGACATCATTAAGAAGAAACATGGGGTCTGAGTTTTCTATAATGATAAAGGAGGCTAAAGCCTTGGGGATGGCTCTTGGCATTTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCGCAGTGTGCTTTGTTGAACTTTGAGTCATTATGTGATGGATGTTTCAGTTCAGATTCAGATATATTTCTTTTTGGTGCAAGGACGGTGTATAGGGATATCTGTCTCGGTGACGGTGGACATATTGTTTGTTATGAGATGGCAGACATTGAAACAAAACTTGGATTTGGAAGGGATTCACTGATTGCTCTTTCTTTACTTCTTGGCTGTGACTATTACCAAGGGGTTCATGGTTTGGGTCCGGAATCAGCTTGCCAGATTGTAAAATCAATTGGGGACAAATTTGTTCTTAAAAAAATTGCTTCTGAAGGGCTTGAATGGGCCAAAAAAAGAAAAGGAGGTGTAAATAATTTACAGAAAGATGAGAAGGTTTTGCAAGTAATTAATGCTTATATGAAACCAAAATGTCATTCAGCAGATTCAGATGTTGTGCATAGGGCTTTGGCTCAGTACCAGTTTCAACGTATTAAACTCCATCAGATATGTACTGAATTGTTTGAGTGGCCTTCAGAGAAAACAGATGGTTACATCCTTCCGAGCATCGCTGAAAGAGATTTACGAAGATTTGCCAATTTGCGGATAACTTCATCTGAACTTGGATTGAACCCTCCTTTACACGAGATCCCTGTGAAGTGTCCTGTTTCGGAAATAGTCAAGAATAGAAGAGTTCAAGGGAGAGAATGCTATGAAGTTTCTTGGGAAAAAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGTGCATGTCCTGAGAAGATTTTGGAGTTTGAGGAGAGAAAAGCTCAAAAGAAGAAACAAAACATTCAGAAAAGAAGACCAAAGAAGAATGAAACTGCATCATCTGTGGCTGAACTTGATGAAAAGCTTCAGAATTTGTTGCTGGATATCAATCTGGGAGACAAAGGCAACCACAATGGTGAGAGTTTCGGATTTTCAACTGCAATGGCTGCAACTGATCTCAGCACCTCAGAGTTTTCATATCAATCCCATGTTAACATAGAAGATATCAGGAACATATCTACCAATGATACTGTTTCTAGTTCCATTACCATTTCAAGTATGCATAAAGTTGAGGTCATAGATCTTCTGAGCCCTTCACCAGCACCAAAGAAATCTCATGAACAACGATCAAGTAAACAAAATGTTGAAGTGATTAATTTGAGTGACATAGAAAATGACATGTCACCTGAACACAAGGAGAAAGCAAAAGACTTGAGATTGTTCTTAGCAAGTATTAGAAATGAAATGCACTGA 1698 0.4016 MGVKNLWDILESCKKTVPLHHLQNKRVCVDLSCWMVQLQNVSKSHACMKEKVYLRGLFHRLRALIALNCNVVFVADGSIPAIKLSTYRRRLNMGKEVEHNETNSQQVTSLRRNMGSEFSIMIKEAKALGMALGISCLNGIEEAEAQCALLNFESLCDGCFSSDSDIFLFGARTVYRDICLGDGGHIVCYEMADIETKLGFGRDSLIALSLLLGCDYYQGVHGLGPESACQIVKSIGDKFVLKKIASEGLEWAKKRKGGVNNLQKDEKVLQVINAYMKPKCHSADSDVVHRALAQYQFQRIKLHQICTELFEWPSEKTDGYILPSIAERDLRRFANLRITSSELGLNPPLHEIPVKCPVSEIVKNRRVQGRECYEVSWEKMDGLETSIVPADLIESACPEKILEFEERKAQKKKQNIQKRRPKKNETASSVAELDEKLQNLLLDINLGDKGNHNGESFGFSTAMAATDLSTSEFSYQSHVNIEDIRNISTNDTVSSSITISSMHKVEVIDLLSPSPAPKKSHEQRSSKQNVEVINLSDIENDMSPEHKEKAKDLRLFLASIRNEMH 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03345 565 Gene3D - 2 199 - -
Adu05g03345 565 Gene3D - 355 423 - -
Adu05g03345 565 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 336 IPR036279 -
Adu05g03345 565 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 469 IPR006084 -
Adu05g03345 565 CDD PIN_GEN1 2 198 - -
Adu05g03345 565 MobiDBLite consensus disorder prediction 409 429 - -
Adu05g03345 565 SUPERFAMILY Chromo domain-like 357 412 IPR016197 -
Adu05g03345 565 Pfam XPG N-terminal domain 1 92 IPR006085 GO:0004518
Adu05g03345 565 SMART xpgineu 130 200 IPR006086 GO:0004518
Adu05g03345 565 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 469 - -
Adu05g03345 565 Gene3D - 201 271 - -
Adu05g03345 565 SMART HhH_4 202 235 IPR008918 GO:0003677|GO:0003824
Adu05g03345 565 SUPERFAMILY PIN domain-like 2 215 IPR029060 -
Adu05g03345 565 SMART xpgn3 1 97 IPR006085 GO:0004518
Adu05g03345 565 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Adu05g03345 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Adu05g03345 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Adu05g03345 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Adu05g03345 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Adu05g03345 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03345 Adu-Chr5 105896602 105900856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03345 1 236 Core DNA Replication Machinery Family AT5G26680 25.490 1.82e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03345 K15338 - gmx:100806919 886.33