Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03333 ATGGAGGGCCACAGTGAACTGGGTCTTATTGGAGATCATTTTGACGGCGGTTTGCTGGGCAGGATTAAGGACGATGGGTATGAAAGCCGGTCCGGTAGCGACAATTTCGAAGGTGCATCTGGTGATGATCAAGAAGCTGCTAATGATCAGCCAAAGAGGAAAAAGAAATACCACAGGCACACTCCTCACCAAACTCAGGAGCTTGAAGCTTTCTTCAAGGATTGTAATCATCCTGATGAGAAGCAAAGGGCAGATCTTAGTAGAAGGCTTGGCTTGGAGAATAAGCAAGTCAAGTTCTGGTTTCAAAATCGACGAACCCAAATGAAGACGCAAATCGAGCGCCATGAGAACATGATTCTTAAGCAGGAAAATGAGAGGCTCCGAGCTGAGAACAGTGTGATGAGGGAAGCTATGGCAAACCCAATGTGCAACAACTGTGGTGGAGCAGCCATTCCAGGGCAAATTTCATTTGATGAGCATCAGATTAGAATTGAAAATGCTCGGTTGAAGGATGAATTGAACCGTATATGTGCCTTGGCGAACAAGTTTCTTGGCAGGCCAATCTCATCATTGGCCAGCCCCATGTCCTTGCCTGCCTCGAATTCTGGTCTAGAGCTCGGTATTGGCAGGAATGGTTTTAGTGGTGGTTCAAGCGGTCTTGGCATGTCAATGGGGCTTGATTTTGGGGACTTTTCAGGGGGCACTCTGCCTGCGATTTCTGGGATTAGATCACCGATGGGGTTGATGGGAAATGAAATCCATGCGGAGAGATCTATGCTATTGGAACTTGCATTAGTGGCTATGGACGAATTAATCAAGATGGCTCAGGCAGATAGCCCACTTTGGATTAAGATGGATGGCGGGAAGGAAATTCTGAACCAAGAAGAGTATGCAAGAATGTCTTCTTTTATTTCTCCAACATCTCCGGGATATGTAACTGAAGCTTCGAGAGAAACCGGTGTAGTAATAATCAACAGTTCAGCCCTCGTTGAAACAATGATGGACCCGGAACGATGGTCGGAGATGTTTCCTTCTATGGTTTCTAGAGCTGTAACCCTTGATGTTATAGCTAGTGGCATGGGTGGATCAAGAAATGGATCTTTGCAAGTGATGCAAGCGGAGATTCAATTGCTTTCGCCACTCGTTCCTGTTCGTCAATTGAGCTTCCTCAGGTTTTGCAAGCAGCATGCAGAAGGGTTGTGGGCAGTGGTAGATGCTTCAATTGATGCTGGTCGCAATTTTAAGAGGCTTCCATCAGGCTTTCTTGTGCAAGATACACCCAACGGTTTCTCAAAGATTACTTGGGTTGAGCATTCCCAATATGATGAGAGTCTCATTCACCAACTGTATCGGCCGTTGATTGCTTCCGGGCTCGGCTTCGGCGCTCCTAGATGGATTGCCACTCTCCAAAGGCAGTGTGAATGTTTGGCAATACACATGTCCTCTTCAATCCCAAGCGAGGACGCCACAGCCATAAGCCCAGCTGGTAGGAGAAGCATGCTGAAGCTTGCGCAACGCATGGCTAATAACTTCTTTTCTGGGATTTGTCTGTCTTCATCGCAAAAATGGGACACACACCATCTCGGCAATGTTGGTGATGAGATCAAAGTTATGACCCGGAAAAACACTGATGTCCCCGGTGAGCCCCCTAGCATCGTCTTGTGTGCGGCCACTTCAGTCTGGATGCCGGTGTCGCGGCAGAGGGTGTTTGACTTCTTGCGTGACGAACGGATGAGAGGGGAGTGGGTCATCTTATCCGGCATTGGACAAATGAAGGAGATGCTTCGCATTTCCAAAGGACAAGTTGATGGAAATTCCTTATCGGTCCTTCGTGCTAATGCTAATAATGGCGGCGAGAGCAGCAACAACACGCTGTTTTTGCAGGAGACATGGAACGATACCTCATGCTCGGCGTTGCTGTATTCGCCGGTGGAGGTGGAATCGTTGAAAGTGGTAATGAGTGGAGGAGATTCCACATATGTTGCACTCATCCCTTCAGGCTTTACCATTCATCCGGATGGTCATTCCGGCACACAAGATGGAGATGACGGTGGCAGTTCCGGATGCCTGCTCACAGTTGGGCTACAGATATTGCTGAACAGCCTCCCCACGGCCAAGCTCACGGCGGAGTCAGTCGAAACCGTGAACGACCTCATCACAGGCACCATTCAGAAGATCAAAGCTTCACTAGGAGTTGCGTAG 2202 0.4841 MEGHSELGLIGDHFDGGLLGRIKDDGYESRSGSDNFEGASGDDQEAANDQPKRKKKYHRHTPHQTQELEAFFKDCNHPDEKQRADLSRRLGLENKQVKFWFQNRRTQMKTQIERHENMILKQENERLRAENSVMREAMANPMCNNCGGAAIPGQISFDEHQIRIENARLKDELNRICALANKFLGRPISSLASPMSLPASNSGLELGIGRNGFSGGSSGLGMSMGLDFGDFSGGTLPAISGIRSPMGLMGNEIHAERSMLLELALVAMDELIKMAQADSPLWIKMDGGKEILNQEEYARMSSFISPTSPGYVTEASRETGVVIINSSALVETMMDPERWSEMFPSMVSRAVTLDVIASGMGGSRNGSLQVMQAEIQLLSPLVPVRQLSFLRFCKQHAEGLWAVVDASIDAGRNFKRLPSGFLVQDTPNGFSKITWVEHSQYDESLIHQLYRPLIASGLGFGAPRWIATLQRQCECLAIHMSSSIPSEDATAISPAGRRSMLKLAQRMANNFFSGICLSSSQKWDTHHLGNVGDEIKVMTRKNTDVPGEPPSIVLCAATSVWMPVSRQRVFDFLRDERMRGEWVILSGIGQMKEMLRISKGQVDGNSLSVLRANANNGGESSNNTLFLQETWNDTSCSALLYSPVEVESLKVVMSGGDSTYVALIPSGFTIHPDGHSGTQDGDDGGSSGCLLTVGLQILLNSLPTAKLTAESVETVNDLITGTIQKIKASLGVA 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03333 733 ProSiteProfiles START domain profile. 253 478 IPR002913 GO:0008289
Adu05g03333 733 SMART HOX_1 53 115 IPR001356 GO:0003677
Adu05g03333 733 MobiDBLite consensus disorder prediction 20 63 - -
Adu05g03333 733 Pfam Homeodomain 54 109 IPR001356 GO:0003677
Adu05g03333 733 Pfam START domain 263 475 IPR002913 GO:0008289
Adu05g03333 733 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 731 IPR042160 -
Adu05g03333 733 CDD homeodomain 54 111 IPR001356 GO:0003677
Adu05g03333 733 SUPERFAMILY Bet v1-like 256 475 - -
Adu05g03333 733 SUPERFAMILY Homeodomain-like 41 111 IPR009057 -
Adu05g03333 733 SMART START_1 262 475 IPR002913 GO:0008289
Adu05g03333 733 CDD START_ArGLABRA2_like 257 474 - -
Adu05g03333 733 SUPERFAMILY Bet v1-like 494 717 - -
Adu05g03333 733 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Adu05g03333 733 Gene3D - 40 128 - -
Adu05g03333 733 Coils Coil 105 140 - -
Adu05g03333 733 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 5 731 - -
Adu05g03333 733 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03333 Adu-Chr5 105774635 105778236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03333 23 730 Homeobox Transcription Factor Family AT3G61150 56.849 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Adu05g03333 START 7.9e-42 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03333 K09338 - gmx:100785102 1028.08