Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03297 ATGCCATTCTCAAGGAGGAACCACAATTCTCCAAGCAACTTAGTCAAGATTCTTTCGTCCAGTCGAAAGGCGGTGCCAAAGAAAATTCTTGAGGTGATGAATGTGCCTAACTTGACTAGGGAAAATGTTGCCAGTCACTTGCAGAATTACCGCATATTTCTGAAAAAAATTTCAGAGAAAAGGATAATTGCAGGAATATCTGAAAGAACACTAAGGTCAAGATTCGCTGCTGAGCTTCCAATTAAGATGATCAGAGCATTACAAGCCTTATATGAGAAACTTAATAATAATAATAATAATTATATAACTCCCTTACCCATTTCATTGATCCAAGCTCTCCTTGATTACCATCACCCTTACAACCCTAATTTTCCTTACCTCATTCCAACCAATAATAACACAGCCTTGAACCAAGTCATGAGTCTTGGAGTTGCACCCCAATTCCTTGGACCAAAAGCTCCTATTGTAATGCATCATCAAAACTATGCTCAATCACCAATGGGGATTAACAATCATCAGCAGCAGAGGTATGATCCAAGAGTGTATCATCAAAGCTATGATCTTGGAACGGGAAACATGGTTTCTTTGGGAAACCCTAATGTTAATAATAACATTCCCATGATCAATGCTGCTCCTTCTTGTTACCCTAGTGTTCCCCCTGCAGGAATTCACAATCAAATGAAGTATAATTATGGTGTCCAAGGCCATGGAGGGTTCAATGGTGTTGGTGGTGCAACTACTAATGCTGTTCCTGTTCCTGTTCCTATTCCTATTTCCATTTCCAATAACCACTATAATAGTAATGTTAACGGATTTGGATTCATGGATGGAGCTCCTATCAATAATGTCAACGTGGGAGCTTTTGGGAATAATGGAAATTATCCTGCTTCGATTCAAGGATGTTATGTTCCTCCTGGATTCTATGCTTCTCCGCCTTCTCCTCCTCCTCCTGCTGGATATTATGCTCCTCCACCGCGGCCTCCTGCAACCGCGGCTAACAATAATGGAATTATTATTGATGAACTTTCAGCAATGTTGATGCATCATGCAGCAGCACAAAAGAATTCAGGAGGGATCCAAGACAAAGAATTGCCTCCGCTTGTTGAAAGCCCTTGCGACAGCAATGAAGAACACTCTAAAAATGCAAGTGCAATCAATGAGGATCAGAGTATTCTAGATGATGATGATTACGTTCTTTTCAACCTTCTCTTCATGCTAGAGGACATGCATATATATTCTCAAAGAGAATTTGGAAGATCATTGCCTATGAGTTCTATGGCAAGAAAGATCTATCTGAGAGACGGTCTTGGTGTTGGTGCTTTCAAGAGGATTTATGGTGGTAGCCAGAGGAATGGAAGCTGTCCCCCACATTTCTGCGAGAGCAGTAGTGCTATTGCTAGACACATTTTACAACAGCCAGAAAGTATGACCGTCATTGAGGTTGATCCAAAAGGTTAA 1458 0.4081 MPFSRRNHNSPSNLVKILSSSRKAVPKKILEVMNVPNLTRENVASHLQNYRIFLKKISEKRIIAGISERTLRSRFAAELPIKMIRALQALYEKLNNNNNNYITPLPISLIQALLDYHHPYNPNFPYLIPTNNNTALNQVMSLGVAPQFLGPKAPIVMHHQNYAQSPMGINNHQQQRYDPRVYHQSYDLGTGNMVSLGNPNVNNNIPMINAAPSCYPSVPPAGIHNQMKYNYGVQGHGGFNGVGGATTNAVPVPVPIPISISNNHYNSNVNGFGFMDGAPINNVNVGAFGNNGNYPASIQGCYVPPGFYASPPSPPPPAGYYAPPPRPPATAANNNGIIIDELSAMLMHHAAAQKNSGGIQDKELPPLVESPCDSNEEHSKNASAINEDQSILDDDDYVLFNLLFMLEDMHIYSQREFGRSLPMSSMARKIYLRDGLGVGAFKRIYGGSQRNGSCPPHFCESSSAIARHILQQPESMTVIEVDPKG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03297 485 Gene3D - 4 58 - -
Adu05g03297 485 SUPERFAMILY Homeodomain-like 15 56 IPR009057 -
Adu05g03297 485 PANTHER 40S RIBOSOMAL PROTEIN S19 424 485 IPR001266 GO:0003735|GO:0005840|GO:0006412
Adu05g03297 485 SMART Ribosomal_S19e_2 410 484 IPR001266 GO:0003735|GO:0005840|GO:0006412
Adu05g03297 485 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 15 52 IPR006447 GO:0003677
Adu05g03297 485 Gene3D - 387 485 IPR036388 -
Adu05g03297 485 Pfam Ribosomal protein S19e 423 482 IPR001266 GO:0003735|GO:0005840|GO:0006412
Adu05g03297 485 PANTHER 40S RIBOSOMAL PROTEIN S19-1-RELATED 424 485 - -
Adu05g03297 485 SUPERFAMILY "Winged helix" DNA-binding domain 423 484 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03297 Adu-Chr5 105325546 105335138 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03297 424 485 Cytoplasmic Ribosomal Protein Gene Family AT5G15520 75.806 9.36e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Adu05g03297 Ribosomal_S19e 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03297 K02966 - aip:110272169 537.339