Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03295 ATGTTTACCTTCACTACTACTCGCTCTAACTCCACCACATGGCCGGCTGTTAACTCTGAATTCTCCACTTCCTATGACACTTCCTCGCCCGTTTCTGACGCAAGTACCAGTGGAGGCGGCGTTCATGGTTTCGTGTTTTCTGACGAGGAGGTGCTGCTGGCGGCAACCCATCCCAAGAAGCGAGCGGGGAGGAAGAAGTTCAAGGAGACACGTCACCCTGTGTATAGGGGTGTGAGGAGGAGGAACTCTGATAAGTGGGTTTGTGAAGTTAGGGAGCCAAACAAGAAGTCTAGGATTTGGTTGGGGACATTTCCCACGGCTGAGATGGCGGCGCGTGCCCATGACGTGGCAGCAATCGCCTTGAGAGGCCGCCATGCCTGCCTTAACTTTGCTGACTCCGCGTGGCGGCTACAGTTGCCTGCCACGTCAGATGCCAAGGCCATCCAGAAGGCTGCAGCAGAGGCTGCCGAAGCCTTCCGACCTAGGATGGCCTTGGAGACTAATGACAATTCCAAAGAAGTGGCAGTGACGGCGGCCGTGCCAAAAGAAGAGGAGCAAGGAGTGTTTTGTATGGAGGAGGAAGAGGCCGAGACGGTGTTGGGATTGCCGGAATCATTGAGAAATATGGTGCTCATGTCCCCAACACATTGCATGGGGTATGAGTACGGATATGCTGACGTGGACGTTGGTGATACTGAGGTGTCATTATGGAGTTTTCCAATTTAG 726 0.5372 MFTFTTTRSNSTTWPAVNSEFSTSYDTSSPVSDASTSGGGVHGFVFSDEEVLLAATHPKKRAGRKKFKETRHPVYRGVRRRNSDKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGRHACLNFADSAWRLQLPATSDAKAIQKAAAEAAEAFRPRMALETNDNSKEVAVTAAVPKEEEQGVFCMEEEEAETVLGLPESLRNMVLMSPTHCMGYEYGYADVDVGDTEVSLWSFPI 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03295 241 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Adu05g03295 241 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Adu05g03295 241 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Adu05g03295 241 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Adu05g03295 241 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Adu05g03295 241 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Adu05g03295 241 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 22 240 IPR045277 GO:0003700
Adu05g03295 241 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 22 240 - -
Adu05g03295 241 SUPERFAMILY DNA-binding domain 74 133 IPR016177 GO:0003677
Adu05g03295 241 CDD AP2 75 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03295 Adu-Chr5 105275204 105276505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03295 12 239 AP2-EREBP Transcription Factor Family AT4G25470 53.419 3.73e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Adu05g03295 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03295 - - adu:107491210 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g03295 05 105275204 105276505 Adu09g02404 09 111411955 111413078 ECH
Adu05g03295 05 105275204 105276505 Adu05g03295 05 105275204 105276505 ECH
Adu05g03295 05 105275204 105276505 Adu09g02404 09 111411955 111413078 PCT