Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03279 ATGCTCGCCACTCCATTCAACAATGATGCGTCTTTTGGGAAGGTTGTATATTTTGTGCCCTACCTTTTCTTGTTTTTACCAAATGGGGGCATCCACCAACTTCTGAAGAAGAAGATGGTGAGAGGAAAGATTGAGATGAAACGGATAGAGAATGCAACAAGCCGTCAAGTAACGTTTTCAAAGAGGAGGAGTGGGCTTCTAAAGAAAGCACATGAGCTTTCTGTTCTTTGTGATGCACAAATTGCTCTTATAATCTTTTCACAAAGTGGGAGGCTCTTTGAATACTCAAGTACTTCAGACATGGATCAACTTTTGGAACGCTACCGTCAATATGTAGCAGATGATGGTCGTATCAATAATATTGGAGAATTCCAGCAATTGGAATTTGATCCCCCAAGCTTGGCTAAGAAGATTGAACTTCTTGAGCTTTCTCAAAGGAAGCTAATGGGACAGGGCCTGAGCTCTTGTTCATTTGATGAACTCGTTGGAATTGAGAATCAGCTTGTGTCAAGCTTGCAAAACATTAGGCTCAAAAAGGCTCAGCTTTATAGAGAGCATATTGAACAACTACAAAATAAGGAGAAGGATTTGCTCCTGGAGAATGCCAAATTAACTGAAATGTGTGTGCAAAGAAAAAAATCAGAAGAGCAATGGGGCAAACAGAGAGGCGCAACATTATCCCCTAGTCCAAGTAACCAAAGTTCTGTTCTTGTGGAGACTGAATTGTTCATTGGACTTCCTGAATGGCGCTAG 753 0.4117 MLATPFNNDASFGKVVYFVPYLFLFLPNGGIHQLLKKKMVRGKIEMKRIENATSRQVTFSKRRSGLLKKAHELSVLCDAQIALIIFSQSGRLFEYSSTSDMDQLLERYRQYVADDGRINNIGEFQQLEFDPPSLAKKIELLELSQRKLMGQGLSSCSFDELVGIENQLVSSLQNIRLKKAQLYREHIEQLQNKEKDLLLENAKLTEMCVQRKKSEEQWGKQRGATLSPSPSNQSSVLVETELFIGLPEWR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03279 250 PANTHER MADS-BOX PROTEIN SOC1 39 247 - -
Adu05g03279 250 CDD MADS_MEF2_like 41 115 IPR033896 GO:0000977|GO:0045944
Adu05g03279 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 48 95 IPR002100 GO:0003677|GO:0046983
Adu05g03279 250 ProSiteProfiles MADS-box domain profile. 39 99 IPR002100 GO:0003677|GO:0046983
Adu05g03279 250 ProSiteProfiles K-box domain profile. 124 214 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu05g03279 250 Gene3D - 52 115 IPR036879 GO:0003677|GO:0046983
Adu05g03279 250 SUPERFAMILY SRF-like 41 115 IPR036879 GO:0003677|GO:0046983
Adu05g03279 250 ProSitePatterns MADS-box domain signature. 41 95 IPR002100 GO:0003677|GO:0046983
Adu05g03279 250 PRINTS MADS domain signature 41 61 IPR002100 GO:0003677|GO:0046983
Adu05g03279 250 PRINTS MADS domain signature 76 97 IPR002100 GO:0003677|GO:0046983
Adu05g03279 250 PRINTS MADS domain signature 61 76 IPR002100 GO:0003677|GO:0046983
Adu05g03279 250 PANTHER MADS BOX PROTEIN 39 247 - -
Adu05g03279 250 Coils Coil 180 207 - -
Adu05g03279 250 SMART madsneu2 39 98 IPR002100 GO:0003677|GO:0046983
Adu05g03279 250 Pfam K-box region 132 208 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03279 Adu-Chr5 105114832 105126910 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03279 39 250 MADS-box Gene Family AT4G22950 49.774 7.80e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu05g03279 K-box 5.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03279 - - gmx:100800580 228.794