Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03178 ATGGATGCAACAAGTTCCGTAGATGAAAGCACCACGTGCACAAATGACTCGCTTTCCATAACCCTAACCCCGGCGACACCCGCGTCGCCATTCACCGCCACATCGAAGAAGCTGTCACCGCCGCCACCAAACAGCTTATGTCGTGTCGGCAGCGGTGCCAGCACAATCGTGGATCCGGACGTCGGTGGCGGCGTCACCGAAGTGGAGTCACGAAAACTCCCTTCCTCCAAGTATAAAGGTGTGGTTCCCCAACCAAACGGACGTTGGGGCGCTCAGATTTACGAGAAGCATCAACGCGTTTGGTTGGGGACCTTTAACGAGGAGGACGAGGCCGCTAGAGCCTATGACATCGCAGCACAACGGTTTCGTGGCAAGGATGCCGTCACCAACTTCAAGCCCCTCGGCAGTGTTGTGTCCAACAACACCGCGGTCGAGGACGAGGATTTCGAGAGCGAGTTTCTCAACTCGCATTCAAAATCCGAGATCGTGGACATGCTGAGAAAACACACGTACAATGACGAGCTGGAGCAGAGCAAGCGGAGCCGCGGCCTCATAGGGCGGCGGCTCAACCGAGCTGCGGGTAACGGAGGTTCCGCGGGGATGATGTCTTCATCCGGCGCGTGTGGAGGGAAGGCGCGTGAGCAGTTGTTCGAGAAGGCCGTTACGCCAAGTGACGTGGGAAAACTGAATCGTAGCCAGAGCTACGTGCTAACGAAAGGCTGGAGCCGGTTCGTTAAGGAGAAGAACCTGAAAGCCGGTGACACGGTTTGTTTCCACCGGTCCACTGGACCGGACAGGCAACTGTTTATAGACTGGAAGGCGAGGAGTGTTGGTAATGATGGGGTTGGGTTTTTTGGACCGATTGGACCGGTTTTGGAGCCGGTTCAGATGGTTCGGCTCTTTGGTGTTAACATTTTAAAGCTTCCTGGATCTGATGCCGGTGATAGCAATAACAATAATATTCTGAATATCAATAATGATAATAATGTTGCTGGTTCAATTGGTGGGTGCTTCAATGGGAAGAGAAAAGAGATGGAACTGTTTACGTTGGAGGGTAGCAAGAAGCCTAAGATCATTGGAGCTTTGTAA 1089 0.5317 MDATSSVDESTTCTNDSLSITLTPATPASPFTATSKKLSPPPPNSLCRVGSGASTIVDPDVGGGVTEVESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLGSVVSNNTAVEDEDFESEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGLIGRRLNRAAGNGGSAGMMSSSGACGGKAREQLFEKAVTPSDVGKLNRSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDRQLFIDWKARSVGNDGVGFFGPIGPVLEPVQMVRLFGVNILKLPGSDAGDSNNNNILNINNDNNVAGSIGGCFNGKRKEMELFTLEGSKKPKIIGAL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03178 362 Pfam B3 DNA binding domain 230 273 IPR003340 GO:0003677
Adu05g03178 362 Pfam AP2 domain 76 124 IPR001471 GO:0003700|GO:0006355
Adu05g03178 362 CDD AP2 76 131 IPR001471 GO:0003700|GO:0006355
Adu05g03178 362 Gene3D AP2/ERF domain 76 133 IPR036955 GO:0003700|GO:0006355
Adu05g03178 362 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 231 - -
Adu05g03178 362 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 230 362 - -
Adu05g03178 362 SUPERFAMILY DNA-binding domain 76 132 IPR016177 GO:0003677
Adu05g03178 362 ProSiteProfiles AP2/ERF domain profile. 77 132 IPR001471 GO:0003700|GO:0006355
Adu05g03178 362 MobiDBLite consensus disorder prediction 1 45 - -
Adu05g03178 362 Gene3D - 228 281 IPR015300 -
Adu05g03178 362 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 231 IPR044800 GO:0003700
Adu05g03178 362 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 230 362 IPR044800 GO:0003700
Adu05g03178 362 MobiDBLite consensus disorder prediction 1 41 - -
Adu05g03178 362 SUPERFAMILY DNA-binding pseudobarrel domain 216 272 IPR015300 -
Adu05g03178 362 CDD B3_DNA 228 261 IPR003340 GO:0003677
Adu05g03178 362 SMART rav1_2 77 138 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03178 Adu-Chr5 103186442 103187769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03178 5 362 B3 DNA Binding Superfamily AT1G25560 48.804 3.90e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Adu05g03178 B3 6.8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03178 K09287 - gmx:100776987 443.736