Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03172 ATGGCCCAGATGACACAATCTCTTGCTGAGGGAAAGGCCATGAGCTTAAAGAGTGGAATAGTGCCTAGCAAGAACAATGAAGGTCAACTTGAGGCGACAAAGGAGGAGTTAGAAGTGCAAGTGCaagatcaagagGGGAGGAAAGACGTTGTTTCTAAGAATGTTAGAATGTATAATTTTCAGCAAATGGGTCGTGGAAGACTATCAATGGAGCTAATTCAGAAAGAAAAAGCTAGGAAGACAACATTTGTAAAGAGAAAGAATGGATTAATGAAGAAAGTGGACGAGTTCTCCACTCTTTGTGGTGTTGATGTTTGTTTAATTATCTATGGCCCCAACTTTGATGGTCAAAGACCCACCAAACCTGAGACATGGCCCCAAGACACCGACCAGGTACGCCGAATCATTCAAAAGTACCATAACACAACAAGTGATAGACCTCCTAGGATCTATGATATTGAAAAGTATTATAGAGATAGGGTTAAGAAAGTTGAAGGTGAGATTTCTAAGGTGCACAAGGAGAAGGAGAAGCTTAAGCCCAAGATCACATATCCTACTTGGGATACCTCATTCAATGATCTTAGGGAAGACCAACTGATAATGTTTGCTGGAATTTTGGATTCTAAGATTGTGTCTTGCAATCAAAGAATCAACATGCTAAAGCAAAATCCCAAGGGAAAAGCAATAATGGTAGAATCAAAAGACAATGTTGATGAGAATGTTTTTGCTACTCTTTACTTGGCTTCATCAAACCCTAGTAGCTACCTTAATTTTATGCCAAACAAGTCTCAGCAAGCACAGTTTATTCCTCACCTTCCCATGACACCCATTATTGATTATACCACCCAATTACCATTCTACCCTTCGCAATTAGGGGGAAGTTCATCACAATCTTCCACTCTTCATTTTGACCAAAATAGTATGCAACTTATGGGAAAAAATGGGACTTTGGATTGGGAGCAACCAGTTGGTACTTTTAGCACTCATGATATACAAGTTGATTTTCTAAATTACACTGGAGATGGAAGCAACAACCAGAACTCTTCATCGCCATGCTATTACAATGGGAATATACAATCTGTGCAGCCATATAGTTTTGCTCTACCTCAATATGAAGATGTGCCTCCTGAGTTTCAAGTTAATGGACTCTATGATACAAATGTGTCATCAAGTTCAAATGTTCAACTACATGCATGA 1197 0.3893 MAQMTQSLAEGKAMSLKSGIVPSKNNEGQLEATKEELEVQVQDQEGRKDVVSKNVRMYNFQQMGRGRLSMELIQKEKARKTTFVKRKNGLMKKVDEFSTLCGVDVCLIIYGPNFDGQRPTKPETWPQDTDQVRRIIQKYHNTTSDRPPRIYDIEKYYRDRVKKVEGEISKVHKEKEKLKPKITYPTWDTSFNDLREDQLIMFAGILDSKIVSCNQRINMLKQNPKGKAIMVESKDNVDENVFATLYLASSNPSSYLNFMPNKSQQAQFIPHLPMTPIIDYTTQLPFYPSQLGGSSSQSSTLHFDQNSMQLMGKNGTLDWEQPVGTFSTHDIQVDFLNYTGDGSNNQNSSSPCYYNGNIQSVQPYSFALPQYEDVPPEFQVNGLYDTNVSSSSNVQLHA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03172 398 ProSiteProfiles MADS-box domain profile. 63 113 IPR002100 GO:0003677|GO:0046983
Adu05g03172 398 CDD MADS_SRF_like 64 140 IPR033897 GO:0000981|GO:0000987|GO:0045944
Adu05g03172 398 PANTHER MADS BOX PROTEIN 65 278 - -
Adu05g03172 398 SMART madsneu2 63 122 IPR002100 GO:0003677|GO:0046983
Adu05g03172 398 Gene3D - 75 162 IPR036879 GO:0003677|GO:0046983
Adu05g03172 398 PRINTS MADS domain signature 85 100 IPR002100 GO:0003677|GO:0046983
Adu05g03172 398 PRINTS MADS domain signature 100 121 IPR002100 GO:0003677|GO:0046983
Adu05g03172 398 PRINTS MADS domain signature 65 85 IPR002100 GO:0003677|GO:0046983
Adu05g03172 398 MobiDBLite consensus disorder prediction 1 31 - -
Adu05g03172 398 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 65 278 - -
Adu05g03172 398 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 73 113 IPR002100 GO:0003677|GO:0046983
Adu05g03172 398 SUPERFAMILY SRF-like 64 160 IPR036879 GO:0003677|GO:0046983
Adu05g03172 398 Coils Coil 27 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03172 Adu-Chr5 103096743 103102645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03172 63 216 Type I MADS-box Gene Family AT5G55690 37.580 3.31e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Adu05g03172 SRF-TF 8.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03172 - - aip:107640879 668.692