Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03171 ATGCAATTCTCTGAGAAAATCCAACCCCAGAAGATGGGGTTTCGCGAGTACATCGAAGCATTGGAGGACGAGAGAAGAAAAATCCAAGTCTTCCACAGAGAGCTTCCCCTGTCCTTAGAACTTGTCGCGCAAGCAATTGAAGCCTGTAGGCAGCAGTTATCTGGAACAACGACAGAGTACAATTTGAATGGCCAATCGGAGTGTTCGGAGCAGACATCAACGGACGATCCTGTTTTTGAGGAGTTCATTCCAATCAAGAAAAGGGCTTCACCTGATTGCGATGAAGAAGATGATGAAGAATATTATGATGATGGTGAAGAGCAACATTCTCATAGAAACAAGATTCAAAAGGAGGATAGTACCAACAACAATAATAATAACAGCAGCTGCAGCACTGATAAGAAAAAATCTGACTGGCTCAGATCTGTTCAATTGTGGAACCCTGATCCCCAACCACCTAAAGAGGATGTTCCTAGAAAAGCGTCTGTTGTGGAAGTGAAGAGAAGCATTGGTGGTGCTTTTCAGCCATTTCACAGAGAGGAGAGCACTGTTGGAAAGGTTAATGCATCATCATCATCATTGCCAACTGCCAAAACGCCTTCTTCTCCGCCGGTACCAGCAACAAGTTCCACAGGACCTGTATCGACCGGAGGCAATGCTGGAAGCGGCGGTAAAAGAGAGGATAAAGGACAGGGTCAGAGGAAGCAGCGGCGGTGCTGGTCACAGGAACTACACAAACGGTTCCTTCATGCCCTTCAGCAGCTTGGTGGTGCAGATTCTGCCACCCCAAAACAGATAAGGGAGCTAATGAAGGTTGATGGCCTTACAAATGATGAAGTCAAAAGTCACTTACAGAAATTTCGTCTCCACACAAGAAGGCCAACCACTATGATTCCAAACAGTGCAAACTCCCAAACTGCTCCGTTGTTTCTTGTTGGCAACATTTTTGTTCAGCCACAAGAATATGCTGCTGCTACTGCTGCCATAGCTACCTCAACAGTGTCATCAGGGGAATTAACCACGGTTACAACTGCACCACACGCTGCTATTTATGCACCTGTGGCCACACATCCAACTACCATTGTTCCCCGCACACAAACTCATCCTTCAATGAAGAACTCACCAAAATGCAACAAGTTAGAAGATGTTTCAGATCATTCACATTCAGAAGAAAGGGCTAATCACGGTGAAGGAAATTCTCCTGCCTCATCATCATCCACACATGGCACCACTTCACCTGGCTGTTGA 1248 0.4591 MQFSEKIQPQKMGFREYIEALEDERRKIQVFHRELPLSLELVAQAIEACRQQLSGTTTEYNLNGQSECSEQTSTDDPVFEEFIPIKKRASPDCDEEDDEEYYDDGEEQHSHRNKIQKEDSTNNNNNNSSCSTDKKKSDWLRSVQLWNPDPQPPKEDVPRKASVVEVKRSIGGAFQPFHREESTVGKVNASSSSLPTAKTPSSPPVPATSSTGPVSTGGNAGSGGKREDKGQGQRKQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRPTTMIPNSANSQTAPLFLVGNIFVQPQEYAAATAAIATSTVSSGELTTVTTAPHAAIYAPVATHPTTIVPRTQTHPSMKNSPKCNKLEDVSDHSHSEERANHGEGNSPASSSSTHGTTSPGC 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03171 415 MobiDBLite consensus disorder prediction 88 136 - -
Adu05g03171 415 SUPERFAMILY Homeodomain-like 233 293 IPR009057 -
Adu05g03171 415 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 413 IPR044787 GO:0003700|GO:0006355
Adu05g03171 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 232 292 IPR017930 -
Adu05g03171 415 MobiDBLite consensus disorder prediction 119 133 - -
Adu05g03171 415 Gene3D - 234 292 - -
Adu05g03171 415 MobiDBLite consensus disorder prediction 184 218 - -
Adu05g03171 415 MobiDBLite consensus disorder prediction 174 239 - -
Adu05g03171 415 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 413 - -
Adu05g03171 415 MobiDBLite consensus disorder prediction 361 415 - -
Adu05g03171 415 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 235 290 IPR006447 GO:0003677
Adu05g03171 415 MobiDBLite consensus disorder prediction 378 395 - -
Adu05g03171 415 Pfam Myb-like DNA-binding domain 237 286 IPR001005 -
Adu05g03171 415 MobiDBLite consensus disorder prediction 396 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03171 Adu-Chr5 103079786 103082758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03171 1 317 G2-like Transcription Factor Family AT1G68670 49.697 7.61e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Adu05g03171 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03171 - - adu:107491291 738.413