Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03076 ATGGTGAGGTCTCAGGGCTATGACAAAATTAGTGTCAAAAGGGGTGTTTGGAGTCCAGAAGAAGATGCAAAGATAGTTGCATTTGTGTCAAAGCATGGACCTAGTAACTGGACTTCTGTCCCAAAAAAAGCGGGGCTCAAGAGGTGTGGAAAGAGTTGCAGGTTCCGGTGGACTAATTATCTCAGACCTGATCTTAAGCAAGACACGTTTACATCCCAGGAAGAAGATCTAATCATTAAGCTTCACGCAGCCATAGGAAGCAGGTGGTTCATAATAGCCCAGCAACTCCCTGGGAGAACAGACAATGATGTGAAGAACTACTGGAACACAAAGTTGAAAAAGAAGCTCTCTCAAATGGGAATAGACCCTGTTACTCATAAGCCATTCTCAAAGCTAATTGCTGATTATGGAAACATTGAGGGTTCTCATAGCCAAAAACCAACTAACCAAACTAGCTTTATCAACAACAAAGACTTAAAAAGAAGTTCAATTCTCTTAAATTCAGAGCCATACCAAACCCTGAAACCACAGGGGGTTATATCTAGAATCACCAATAATAATAATAGCCAACAACAAACCCTGCAAATGGAACCAATTACTGATAAGACTAATCTTTCATTTAACTCCTTAACGGATCTTACAATGATGCCAACGGTGATAGGTTCAACAGATTGTGGCATAATGACTGAGAATGAGACCATTACATCTTCGTCTTCTTCAAGTTGTTCCACTCCAGACCAAGACGCCTCGCCGGTGGCATCACATTTCCGTTGGAATGACTTCCTTCTAGAAGACGCCTTTGTGCCAACTGCCGATAACAATGATCAAGAAATGGTGAAGGCTGGTTTCTTGTCAAAGGAGTTACTTGTATGCCGAATTGAGAATGTGTCCCGACAAAGTTGGAACAACAAAGAAGCAAGGTCACAACATGAAGCAATAAGCAATGACTTTCAGCTCTCGTCGTCATCATCTTCCTATGAAACTTCGTTTGTAGAAGCCATGCTTGATCAAGAAAATGAGATGTTTCTGAACTTTCCTCACCTAATGGAGGAACCATCCCACTACTAA 1068 0.4157 MVRSQGYDKISVKRGVWSPEEDAKIVAFVSKHGPSNWTSVPKKAGLKRCGKSCRFRWTNYLRPDLKQDTFTSQEEDLIIKLHAAIGSRWFIIAQQLPGRTDNDVKNYWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIEGSHSQKPTNQTSFINNKDLKRSSILLNSEPYQTLKPQGVISRITNNNNSQQQTLQMEPITDKTNLSFNSLTDLTMMPTVIGSTDCGIMTENETITSSSSSSCSTPDQDASPVASHFRWNDFLLEDAFVPTADNNDQEMVKAGFLSKELLVCRIENVSRQSWNNKEARSQHEAISNDFQLSSSSSSYETSFVEAMLDQENEMFLNFPHLMEEPSHY 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03076 355 CDD SANT 69 112 IPR001005 -
Adu05g03076 355 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Adu05g03076 355 CDD SANT 17 61 IPR001005 -
Adu05g03076 355 Gene3D - 68 131 - -
Adu05g03076 355 Gene3D - 7 67 - -
Adu05g03076 355 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Adu05g03076 355 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Adu05g03076 355 PANTHER F14D16.11-RELATED 1 355 - -
Adu05g03076 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Adu05g03076 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 116 IPR017930 -
Adu05g03076 355 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Adu05g03076 355 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Adu05g03076 355 SMART sant 66 114 IPR001005 -
Adu05g03076 355 SMART sant 13 63 IPR001005 -
Adu05g03076 355 PANTHER F14D16.11-RELATED 1 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03076 Adu-Chr5 101545471 101548290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03076 1 351 MYB Transcription Factor Family AT3G28470 40.669 1.82e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu05g03076 Myb_DNA-binding 5.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03076 K09422 - gmx:100795381 332.798