Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03063 ATGTCTTCTCCAACACCAACCATGGATCCCTCTTCACGCCACTACTCCTACAATCGCAAACAGAAATCCCTCGGCCTCTTGTGCACCAATTTCTTGAAATTGTATAATAAGGACAGCATCCACTTGATCGGCCTCGACGATGCAGCTTCTCGATTAGGTGTTGAGAGGCGGCGGATCTATGATATAGTGAACGTCTTAGAGAGTGTCGGGGTGCTTTCTAGAAAAGCTAAGAATCAGTATACTTGGAAAGGGTTTGCTGCTATTCCTGGGGCTTTACAAGAACTCAAGGACGAGGGTTTGAGGGAGAATCCCTATGGTTTTGACGGTGATAATGAAATTGCAAAATTGTCAGATGACGAGGATGACGAAGAAACAATGTCAAATCCCAGTAATGGAAGTCAGAATGACAAATCAAATCCCAATGCCTCACTTACAAAATCATTGAAGCCTGAAAACAGAAGGGAAAAATCTCTGGCGCTTCTTACTCAAAATTTTGTCAAGCTCTTTGTCTGCTCTAATATCGAAATGATTTCCCTTGACGAAGCTGCAAAGCTGTTGCTTGGAAATGCCCATAATACATCAATAATGAGAACAAAAGTCAGACGCTTATATGATATTGCAAATGTTTTGTCCTCCATGAATCTAATCGAGAAGACCCATACAACAGACACAAGAAAACCAGCATTCAGGTGGCTTGGTTTAAGAGGGAAACCATGGAGTGAGTCAGGTGACTCTGCTCTAAATTCGAATCACAGTGGCGAATCAAGGAAAAGGATGTTTGGTGAAGACATCACCAACATTAGCTTCAAGAGGAACAAAGTGGATCCGTTTATGAATGCTGAGAATAGCTGCAAGAGTTACTCCAAGATTCAAGACCAACTCGAAAACGATGATGATAGTTGTTGGCAAGCTCACACGGATAAAGGCATCGTGAAACAAGAAAGAAAACAGAATTCAAAGGGCTACCATTTTGGTCCTTTTGCTCCAGAGTATGTTTCCAAGAATGGTGGAGCCTCTGAGAATACTAATGTGAAGCAGGTTCATGATTGGGAGAGTCTCTCAAATGTGTATCGTCCTCGGTATCAAAATCAAGATTGA 1098 0.4208 MSSPTPTMDPSSRHYSYNRKQKSLGLLCTNFLKLYNKDSIHLIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYTWKGFAAIPGALQELKDEGLRENPYGFDGDNEIAKLSDDEDDEETMSNPSNGSQNDKSNPNASLTKSLKPENRREKSLALLTQNFVKLFVCSNIEMISLDEAAKLLLGNAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGLRGKPWSESGDSALNSNHSGESRKRMFGEDITNISFKRNKVDPFMNAENSCKSYSKIQDQLENDDDSCWQAHTDKGIVKQERKQNSKGYHFGPFAPEYVSKNGGASENTNVKQVHDWESLSNVYRPRYQNQD 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03063 365 Pfam E2F/DP family winged-helix DNA-binding domain 155 233 IPR003316 GO:0005667|GO:0006355
Adu05g03063 365 Pfam E2F/DP family winged-helix DNA-binding domain 20 84 IPR003316 GO:0005667|GO:0006355
Adu05g03063 365 SUPERFAMILY "Winged helix" DNA-binding domain 18 82 IPR036390 -
Adu05g03063 365 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 11 364 - -
Adu05g03063 365 MobiDBLite consensus disorder prediction 127 147 - -
Adu05g03063 365 MobiDBLite consensus disorder prediction 101 153 - -
Adu05g03063 365 SUPERFAMILY "Winged helix" DNA-binding domain 155 234 IPR036390 -
Adu05g03063 365 Gene3D - 149 235 IPR036388 -
Adu05g03063 365 Gene3D - 14 86 IPR036388 -
Adu05g03063 365 PANTHER TRANSCRIPTION FACTOR E2F 11 364 IPR015633 GO:0000978|GO:0006357
Adu05g03063 365 SMART E2F_TDP_2 19 84 IPR003316 GO:0005667|GO:0006355
Adu05g03063 365 SMART E2F_TDP_2 153 233 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03063 Adu-Chr5 101335773 101341877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03063 14 364 E2F-DP Transcription Factor Family AT3G48160 58.592 4.21e-122 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Adu05g03063 E2F_TDP 1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03063 K09391 - gmx:100818090 467.233