Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03057 ATGGGCGGCAACGGCAAGCACCGTTGGAGAATTTCGTTCCATCGTAATTCGAAGCTGGAGCAACAGCAGCCCAAGCATCCCCCTCCGAACGAATTCATATGCCCCATTTCCGGTTCATTAATGTCCGACCCGGTCGTCGTCGCTTCCGGACAAACCTTCGAGCGCCTTTCCATCCAAGTCTGCAACGACCTCTCCTTCTCCCCCACCCTACCCGACGGAACCCGACCCGATTTCTCAACCATTATCCCCAATCTTAACATCAGGACCAGCATCCAAAACTGGTGCCGTAAAACCAAGACCGTACACCCGCCCGCACCGGATTACTCCTCACTCGAGCGCATCGTCAAGGACGCAATGGCCGCTGCAGCTCCTCCGCCCCCTCCGTCGGAGCCTGACCTTAGGGTTTCTGAAAAGGAGCTCCTGAAGGCGGTGCCGGACAATCCGCCGGTGATATTCTCCCACGCCGCCACTGAGTTAGGTCCCCGAGTCAACCACTTCAACTCGGGATCCTCCGAGGAGTCCGTCGTCATCGGTGGCGCGAGTCCGGGTACTCCGCTTCCGTTCACGGTTCGGCCGACGTGCTTCTCGTCGTCGTCCTCCGTCTCCTCCGTTGAAATTACGGAGGTCGAGATCCAAGGGCAAAACCCTAGCGGACCTCTTTCAGAGGAAGAAGAAAAGCTCGTGGCGAAGATGAAGAGCAACGAGGTCTTCGAGCAGGAAGAAGGAGCGATCTCGCTTCGGAACCTCACGCGGAGCAGCGAGGAAGCAAGGGTTTCACTCTGCACGCATCGAGTCCTCTCCCCTCTGCGTTCTCTCGTAGCATCGAGGTACGGCGTCGTGCAGGTCAACGCTGTTGCTTCACTGGTCAACCTTTCGCTTGAGAGACAAAATAAGGTGAGGATCGTGCGGTCAGGATTCGTTCCGTACCTGATCGACGCGCTCAAGGGTGGATCCTCTGAGACGCAGGAACACGCTGCAGGTGCGCTTTTCAGTTTAGCGTTGGATGATGATAATAAGATGGCGATTGGGGTCCTCGGCGCGTTGCAGCCTCTTATGCACGCGCTCCGATCCGAGTCCGAGCGAACTCGGCATGACTCGGCACTCGCGCTGTACCACTTGACCCTGGTTCAGAGCAACCGGGTCAAGCTTGTGAAACTCGGCGTGGTCTCCACCTTGCTGTCGATGGTGAAATCTGGAACCTTAGCGAGTAGGGTTCTGTTGATTCTTTGTAACCTTGCGGTTTGCATGGAAGGGAGGACGGCGATGTTGGATGCTGATGCGGTGGAGTGTTTTGTGGGATTGTTGAGGGAGAACGAGTTGGACTCGGAGTCAACTCGGGAGAACTGTGTGGCGGCGCTGTATGCGCTGAGTCACAGGAGCCTGAGATTCAAGGGGCTGGCTAGGGAGGCGAGGGCCATGGAGGTGCTGAAGGAGGTGGCGGAGGTGACGGGGACCGAGAGGGCGAGGGAGAAGGCCAAGAGGATTTTGCAGATGATGAGGGCTGCCGGTGATGGGGATGATGATGGGTCGGAGCATGATGGGGTTTTGGAATCCGGCGGGTTGACTCGGATGAGGTACCGCGGCAGTGGTGGCAGGAACAATGCCAACACCACGACGTTCTAG 1623 0.5761 MGGNGKHRWRISFHRNSKLEQQQPKHPPPNEFICPISGSLMSDPVVVASGQTFERLSIQVCNDLSFSPTLPDGTRPDFSTIIPNLNIRTSIQNWCRKTKTVHPPAPDYSSLERIVKDAMAAAAPPPPPSEPDLRVSEKELLKAVPDNPPVIFSHAATELGPRVNHFNSGSSEESVVIGGASPGTPLPFTVRPTCFSSSSSVSSVEITEVEIQGQNPSGPLSEEEEKLVAKMKSNEVFEQEEGAISLRNLTRSSEEARVSLCTHRVLSPLRSLVASRYGVVQVNAVASLVNLSLERQNKVRIVRSGFVPYLIDALKGGSSETQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSESERTRHDSALALYHLTLVQSNRVKLVKLGVVSTLLSMVKSGTLASRVLLILCNLAVCMEGRTAMLDADAVECFVGLLRENELDSESTRENCVAALYALSHRSLRFKGLAREARAMEVLKEVAEVTGTERAREKAKRILQMMRAAGDGDDDGSEHDGVLESGGLTRMRYRGSGGRNNANTTTF 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03057 540 Gene3D - 403 506 IPR011989 -
Adu05g03057 540 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 531 - -
Adu05g03057 540 Pfam U-box domain 29 98 IPR003613 GO:0004842|GO:0016567
Adu05g03057 540 PANTHER U BOX DOMAIN-CONTAINING 1 531 - -
Adu05g03057 540 Pfam Armadillo/beta-catenin-like repeat 335 374 IPR000225 GO:0005515
Adu05g03057 540 Pfam Armadillo/beta-catenin-like repeat 296 333 IPR000225 GO:0005515
Adu05g03057 540 SUPERFAMILY ARM repeat 226 499 IPR016024 -
Adu05g03057 540 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Adu05g03057 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 103 IPR013083 -
Adu05g03057 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 305 342 IPR000225 GO:0005515
Adu05g03057 540 SMART arm_5 294 334 IPR000225 GO:0005515
Adu05g03057 540 SMART arm_5 335 375 IPR000225 GO:0005515
Adu05g03057 540 SMART arm_5 415 458 IPR000225 GO:0005515
Adu05g03057 540 CDD RING-Ubox 33 80 - -
Adu05g03057 540 Gene3D - 220 402 IPR011989 -
Adu05g03057 540 SUPERFAMILY RING/U-box 24 102 - -
Adu05g03057 540 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03057 Adu-Chr5 101156842 101159284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03057 1 537 U-box Gene Family AT5G65200 56.172 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03057 - - aip:107643932 1007.67