Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03040 ATGGCCGTTAGGGGCGTCAATTTCCAGTGGTACGATGGGTTCTTCCTATCCATGCTCGCCACCAGCGTAGTTGTTGTGGCAATCAGTTGGAAGCGCTACCAATCTTGTAGCTACCCTTTGCATCTATGGATTATGATTGATTACACTGCTGTGTTTACTTTCCGGCTTTTGATGTTTGTTGACAATGGACTTGCTTCTGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTGGTTGTTCTTTCAATCCTTGCATTGCTTCTCTATCCATTTCTTTGGGTTTGGACTATAATTGGTTCTCTGTGGTTCATCAGTTCCAAGACTTGTTTGAATGGAGATGGTAAAAAATATGGCTTTCTCATCTGGTTACTTTTTAGCTACTGTGGACTTATTTGTATTGCTTGCATGTCAATGGGGAAGTGGTTGACACGAAGACAAGCACATCTATTACGTGCCCAACAGGGTATTCCTATATCTGAATATGGGGTTCTAGTTGAAATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAATCAAGGGGCATGAACCAAGATGCTGCTGCATATCATCCTGGACTTTACCTAACTCCAGCTCAGCGAGAAGCAGTCAAAGCTTTAATTCAGGAACTCCCAAGGTTCAGCCTAAAGGCTGTTCCAACTGACTGCAGTGAATGCCTCATCTGCTTAGAAGAGTTCCGTGAAGGCAATGAGGTTCGTGGTCTTCCTTGCGCTCACAATTTTCATGTTGAATGCATCGACGAATGGCTTCAGCTGAATGTGAAATGTCCTCAGTGTCGTTGCTCGGTTTTTCCAAATCTTGATCTTAGTGCTCTGTCCAATATTCGTTCCGAATATCAGCAGTCTTCTGAGAGTAGTGTTGGAACATCAACCAGATATGTGCAACTACAACCTTCTAGCCAGAGTTACCTGTTGAGATTACAAGGACTTGTCCACCCAGTGCATGCTGAAATTACAGGGCCAAATGGGGAGACAGACAACGCGTTAGAAAATGCCGAAAATGGTGTTGTACCTGGTACAACAAGAAATGTGTCTAACTTGTGA 1092 0.4414 MAVRGVNFQWYDGFFLSMLATSVVVVAISWKRYQSCSYPLHLWIMIDYTAVFTFRLLMFVDNGLASGMGLDFGWQQRYARFCGRVVVLSILALLLYPFLWVWTIIGSLWFISSKTCLNGDGKKYGFLIWLLFSYCGLICIACMSMGKWLTRRQAHLLRAQQGIPISEYGVLVEMIRVPDWAFEAAGQESRGMNQDAAAYHPGLYLTPAQREAVKALIQELPRFSLKAVPTDCSECLICLEEFREGNEVRGLPCAHNFHVECIDEWLQLNVKCPQCRCSVFPNLDLSALSNIRSEYQQSSESSVGTSTRYVQLQPSSQSYLLRLQGLVHPVHAEITGPNGETDNALENAENGVVPGTTRNVSNL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03040 363 Pfam Ring finger domain 234 276 IPR001841 -
Adu05g03040 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 - -
Adu05g03040 363 MobiDBLite consensus disorder prediction 340 363 - -
Adu05g03040 363 MobiDBLite consensus disorder prediction 337 363 - -
Adu05g03040 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Adu05g03040 363 SUPERFAMILY RING/U-box 216 284 - -
Adu05g03040 363 SMART ring_2 235 275 IPR001841 -
Adu05g03040 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 IPR044793 GO:0004842|GO:0010182
Adu05g03040 363 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Adu05g03040 363 CDD RING-H2_RNF111_like 234 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03040 Adu-Chr5 100769082 100773834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03040 58 361 C3H Transcription Factor Family AT3G47990 72.222 6.30e-157 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03040 K16284 - gmx:100812016 624.78