Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03011 ATGGCTACTTCATTCAACATGATTAAGGATCTTGATATTGCTGTTGCTAATCAAGTTTGGCGTATCAAAGTGCGTGTCATCAAAATATGGTCTATTAATTTAAGCGAAGAGAAGTTCAGGAGACCTAACTTAGAGATGGTTGTTATGGATGAATTAGGTGATCGGATACAATGTTCTGTAAGGAATCCTTTGAGGAGATTATTTGAGCAGGAGTTAGTTGAGGGCAATGTGTACTCTGTTGCTAACTTCTCTATTGAACTTAATGATCAAAAATCTAAGGGTAAGATAAGGTGTACATTGTGGGAGGAGTTTGCTACTCAACTGGTGAAGCATATGGAGCAGTACCCTAATACTGAGTTCATTATTATTGTGCAGTTTGCCAAATTTAACCTGTTCAAGGGAACCATGGGCATATCTAATACAAACTACAACTCTACCTTATACATTAACGCTGATCTTAAAGAAGTTAAGGAATTTAGACAAAGGTTTATCATGGGTAATGACAAGCCATCTAACCAGCTTTCTCAAATTGCATCTGATTCATTGATTTCCCTTGAGCAAGATCTTATTAACCATACTCCTTACAAGTCTATAAGCGAACTTAAGGAGAGCACTGAGGGTGGAATATTTGTTACCATTGGAACTGTGATTTCTATTGACACTAGACTAGGTTGGTGGTACAAAGGGTGCAAGATGTGTTTTCATTCACTTAAAGAAGATGAGAATTCATATTATTGCCATGAATGTGATATTTATCCTAATACTCATGTTCCTCGTTTCTGCATTCAAATGAGAGTATCAGATGAGACAGACTCTGCTTCATTTATTGTTTATGACAAGGAAGCCTCCAAATTTCTTGAGATATCTGCTTCTGAGCTTCGTTTGAGACAGATATCAAAGGGTTGCGGCAAGGATGAATTTCCCGTTGAGATTAATTCATTTAGGGGTAAGAAGTTTCTATTCAAGATTTCTGTGAAGCTTGATGATATCAATGCTTTCCAGCCATGCAAGATTACTGTTTTGAAGTTGACTGAAGATCCAAATCTGCTCACTTCTTTTTCTTCCAAGTACAAGACATTTGATAACACCCCAATCGAAAATACTGAGTTGCAGAGTTTGCAAACTGATTCTACTGATAATTCTAAGGAGATTAGTTCACAGTCTTGCGAAATTATTTCTCTTGATGGCAATGATGACTTTGTAACTCCTAAGAGAGGTATGATAGCTGGTGTAACGGCAAAAAATTTGCTGGACATTTTCCCGGATAATGCCACTACTTCATCATCCAAATGCCGGAAGCTCTCCAAGGAGTCTGATTGTAGCTTTGTCAAAGAGCATGTTGATTAA 1347 0.3734 MATSFNMIKDLDIAVANQVWRIKVRVIKIWSINLSEEKFRRPNLEMVVMDELGDRIQCSVRNPLRRLFEQELVEGNVYSVANFSIELNDQKSKGKIRCTLWEEFATQLVKHMEQYPNTEFIIIVQFAKFNLFKGTMGISNTNYNSTLYINADLKEVKEFRQRFIMGNDKPSNQLSQIASDSLISLEQDLINHTPYKSISELKESTEGGIFVTIGTVISIDTRLGWWYKGCKMCFHSLKEDENSYYCHECDIYPNTHVPRFCIQMRVSDETDSASFIVYDKEASKFLEISASELRLRQISKGCGKDEFPVEINSFRGKKFLFKISVKLDDINAFQPCKITVLKLTEDPNLLTSFSSKYKTFDNTPIENTELQSLQTDSTDNSKEISSQSCEIISLDGNDDFVTPKRGMIAGVTAKNLLDIFPDNATTSSSKCRKLSKESDCSFVKEHVD 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03011 448 SUPERFAMILY Nucleic acid-binding proteins 193 346 IPR012340 -
Adu05g03011 448 Gene3D - 74 173 IPR012340 -
Adu05g03011 448 Pfam Replication factor-A C terminal domain 211 344 IPR013955 -
Adu05g03011 448 SUPERFAMILY Nucleic acid-binding proteins 86 163 IPR012340 -
Adu05g03011 448 Gene3D - 186 352 IPR012340 -
Adu05g03011 448 PANTHER BNAC01G35430D PROTEIN 213 365 - -
Adu05g03011 448 SUPERFAMILY Nucleic acid-binding proteins 4 90 IPR012340 -
Adu05g03011 448 CDD RPA1_DBD_C 198 352 IPR013955 -
Adu05g03011 448 CDD RPA1_DBD_B_like 71 164 - -
Adu05g03011 448 PANTHER REPLICATION FACTOR A 1, RFA1 213 365 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03011 Adu-Chr5 100258632 100261191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03011 85 340 Core DNA Replication Machinery Family AT5G08020 23.574 2.08e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03011 - - adu:107490971 711.835