Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g03005 ATGGAGATTCAGCAGACCCTAAAGCTCATGGTCCACCACCACAACAGAGGAAAGGAAAACAACACACCAAAGCTGAAATGGAGGAAAATTTTCACTCTCCAACGATCACCGCCGTCATCAAAACCCATCCAAACTCCACCGCCGGAAGAGTTCATCTGCCCAATCTCCGGTACTCTAATGGCTGACCCTGTGATCGTATCTTCCGGTCACTCCTTCGAACGAGCGTCCGTACAATCATGCAAAGATCTCAACTTTACCCCTCAACTCTCCGATGGAACCACCCCTGATTTTTCCACCGTGATCCCCAACCTCGCCCTCAAATCCGCCATCTCCAAATGGTGCCACGCGTCATCCACCCTCCTCCCTCAACCCCCACACCGGTCCCTCACCGACAACCTCGTACGGACCCTCATTTTCTCATCTTCCTCCCGCAAAAACAACGCAAACGAGTTAGTGGGAGAGAGAATGCTAACAGCGAACCCTTCTTGTTGTTCTTCTTCTTCCTCCGTTGAGTCTATTGCCACGTCAGCATCAAGCTCCACCCCACCGGCTCAACTTACTGCAAAACCAAGCTTCTGCTACTCTTCACCTTCTTCCTCCGAACTCGAACCAACAACCCCAGAGGCCGAAGAATTCATCTCGAAGCTTCGGAGCAATCAAGTCTTCGTAATCGAAGAATCTCTGCAGAATCTGAGGAAGCTCACTAGAACTAATGAGGACTCAAGGATCACACTCTGCACCCAAAGGATGCTTTCGTCTTTGCGTGGCCTCGTTGCTTCGAAGTATAAAATGGTTCAAGTGAATGCCGTCGCATGTGTCGTGAACCTCTCTCTGGAGAAAATGAACAAGGTGAGGATCGTACGGTCAGGGTTAGTTCCGCCATTGATAGAAGCTTTGAGGATTGGATCCCCTGAGGCGCAGGAACACGCTTCCGGTGCGCTCTTCAGTCTAGCGCTTGAAGACGACAATAAAACCGCGATTGGGGTTCTCGGAGCTCTTCCACCGTTGATTCACGCGCTTCGAGTTGGGACTGAGCGGACTCGGCATGACTCGGCCTTGGCGCTTTACCATTTGTCGATGGTTCAAAGTAACAGAACCAAATTGGTTAAGATTGGATCGGTTCCGGTTTTAATTGGGATGGTTAAGTCTGGTCAGATGACGGGTCGGGTTTTGATGATTTTGGGCAATTTGGGTTGTGGGCCGGATGGGCGGGCTGCAATGTTGGATGTGGGTATGGTTGAATGTTTGGTCGGGTTGTTGGCTGGGTCCGAGTCGGTTCATGGATCAATAAAGGAGAGCTGTGTGGCGGTGCTATACGTGTTGAGTCACGGAGGGTTGAGGTTTAAGGCCGTAGCGAAGGCGGCAGGAGTGGTGGAGGCGCTCGAGAAGGCAGAGAAGGAGGTGGGGAGTCATCGAGCGAAGGAAAAGGCAATGAGGGTTTTGGAGATGATGAAGGGCAAAGAGGACGATGAGGAGGAAGAGGTGGATTGGGAGGAGCTGCTCGACTCCGGTCTAGGAAGCCGGAGTCACAACCACCATGATGGCGAGTTTTCCGGGCTCAATGGGACGACCTCAATCCTCTGA 1584 0.5196 MEIQQTLKLMVHHHNRGKENNTPKLKWRKIFTLQRSPPSSKPIQTPPPEEFICPISGTLMADPVIVSSGHSFERASVQSCKDLNFTPQLSDGTTPDFSTVIPNLALKSAISKWCHASSTLLPQPPHRSLTDNLVRTLIFSSSSRKNNANELVGERMLTANPSCCSSSSSVESIATSASSSTPPAQLTAKPSFCYSSPSSSELEPTTPEAEEFISKLRSNQVFVIEESLQNLRKLTRTNEDSRITLCTQRMLSSLRGLVASKYKMVQVNAVACVVNLSLEKMNKVRIVRSGLVPPLIEALRIGSPEAQEHASGALFSLALEDDNKTAIGVLGALPPLIHALRVGTERTRHDSALALYHLSMVQSNRTKLVKIGSVPVLIGMVKSGQMTGRVLMILGNLGCGPDGRAAMLDVGMVECLVGLLAGSESVHGSIKESCVAVLYVLSHGGLRFKAVAKAAGVVEALEKAEKEVGSHRAKEKAMRVLEMMKGKEDDEEEEVDWEELLDSGLGSRSHNHHDGEFSGLNGTTSIL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g03005 527 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 290 327 IPR000225 GO:0005515
Adu05g03005 527 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 24 514 - -
Adu05g03005 527 SUPERFAMILY RING/U-box 35 121 - -
Adu05g03005 527 SMART arm_5 320 360 IPR000225 GO:0005515
Adu05g03005 527 SMART arm_5 400 443 IPR000225 GO:0005515
Adu05g03005 527 SMART arm_5 279 319 IPR000225 GO:0005515
Adu05g03005 527 SMART arm_5 238 278 IPR000225 GO:0005515
Adu05g03005 527 SMART Ubox_2 50 113 IPR003613 GO:0004842|GO:0016567
Adu05g03005 527 Pfam U-box domain 48 116 IPR003613 GO:0004842|GO:0016567
Adu05g03005 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 121 IPR013083 -
Adu05g03005 527 ProSiteProfiles U-box domain profile. 46 120 IPR003613 GO:0004842|GO:0016567
Adu05g03005 527 SUPERFAMILY ARM repeat 210 488 IPR016024 -
Adu05g03005 527 Coils Coil 474 494 - -
Adu05g03005 527 CDD RING-Ubox 52 100 - -
Adu05g03005 527 Gene3D - 204 483 IPR011989 -
Adu05g03005 527 MobiDBLite consensus disorder prediction 505 527 - -
Adu05g03005 527 PANTHER U BOX DOMAIN-CONTAINING 24 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g03005 Adu-Chr5 100147905 100150163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g03005 1 521 U-box Gene Family AT5G40140 52.527 2.66e-170 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g03005 - - lja:Lj2g3v1020040.1 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g03005 05 100147905 100150163 Adu05g03005 05 100147905 100150163 ECH
Adu05g03005 05 100147905 100150163 Adu04g02723 04 114903186 114907303 PCT