Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g02871 ATGTTAGCGAATAACTCTTCAGTAGCTCCAAGTTCAGAACCATTTTCTTGTGCTGATAATAGTAATGGCACTCCAAGCAATAAAAGGAAGAGAAGACCCGCAGGAACACCAGATCCAGATGCAGAGGTGGTGTCGCTGTCGCCAAAGACGTTATTGGAATCGGATCGATATGTGTGTGAGATCTGCAACCAAGGCTTCCAAAGGGACCAGAACCTGCAGATGCATCGGAGGAGGCACAAGGTGCCGTGGAAGCTTCTAAAGAGGGAGACGCCGGTGGTCAGGAAGAGGGTCTTCGTGTGTCCGGAGCCTACTTGCCTGCACCACGACCCTTGTCACGCACTCGGAGACCTTGTTGGGATCAAGAAGCACTTCCGCCGCAAGCACAGCAACCACAAACAGTGGGTCTGCGAGCGCTGCTCCAAGGGCTACGCGGTGCAGTCCGATTACAAGGCTCACCTCAAGACCTGCGGCACTCGCGGCCACTCTTGTGACTGCGGCCGCGTCTTCTCCAGGGTGGAGAGCTTTATTGAGCATCAAGATGCTTGCAACATGGGGAGGCTTAGGACGGAATCTCATCATAATCATAATCATAATCATCAACCACCACCAACTCCAACTGCATGTTTATCAAGAACAGCTTCAAGTCCAAGCCCTTCAAGAAGTGAAACCAATTTCAGCACTGCTCCATGGCAACCAACATCATCAACAACAACAACAACAACAACAACAACACCAACAAGCCTTGTTGTGATCACAAAACCAATAACAACAACCACAGAACCACCTTTCTTCAACAACACTAACCCTACCCCAATTCTAGCCACTGCTGAAACATTCCTATTCAAGAAGAGTAACACCAGCAACAAACTCCATCACCCAAACTTGGATCTTCAGCTCTCCACCACCACCACCACCACCACCATGATGATGAACAACAACAATTCGATCCCCAATGTTGATTTAACACTATCACCAAAGAGTGATAATAATCATCATCAGCAGCTTCAAAACCAGCAGCATTCAACACAGCTGCAACTCTCCATTGGTGGAACAACCTCGTCAGACATTAGCGAGAACAATAACAAGAACGATTCATCAAACAGGAACTCGTCACCGAAAGAGAGCATCAACAGCAGCAACGAGAACAAGCATGCGACAGCAACAAGCATGGCTTTACGGGTTCAAGAACAAGCGAGGGAGCAACTAAGGTTAGCCATGGCGGAGAAAGCGTACGCAGAAGAAGCAAGGAAACAAGCAAAGAGGCAGATAGAAATGGCGGAACAAGAGTTCAACAATGCAAAGAGGATAAGGCAACAAGCGCAAGCTGAACTCGACAAAGCTTGCGCTCTCAAGGAACATGCAATGAAGAAGATAAACTCAACCATCATGCAAATTACGTGCCATTCTTGCAAGCAACACTTTCATCTTCAACCACCACCAGTATCTGCTACAGCACCACCAGATGAAAATTCCTTGGTTCTCAGTTACATGTCTTCTGGAATCACCACCGAAGGTGCTGGAGAAGTTATAGAGAACAATAATAACGATCATGATACTACTACTACTACTATTACTGATAATAATAATAATAATGGGAAGAAAGCATCTACAGCTACTAACTCTTAG 1626 0.4662 MLANNSSVAPSSEPFSCADNSNGTPSNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRTESHHNHNHNHQPPPTPTACLSRTASSPSPSRSETNFSTAPWQPTSSTTTTTTTTTPTSLVVITKPITTTTEPPFFNNTNPTPILATAETFLFKKSNTSNKLHHPNLDLQLSTTTTTTTMMMNNNNSIPNVDLTLSPKSDNNHHQQLQNQQHSTQLQLSIGGTTSSDISENNNKNDSSNRNSSPKESINSSNENKHATATSMALRVQEQAREQLRLAMAEKAYAEEARKQAKRQIEMAEQEFNNAKRIRQQAQAELDKACALKEHAMKKINSTIMQITCHSCKQHFHLQPPPVSATAPPDENSLVLSYMSSGITTEGAGEVIENNNNDHDTTTTTITDNNNNNGKKASTATNS 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g02871 541 PANTHER OS03G0310200 PROTEIN 1 503 IPR039288 GO:0009630
Adu05g02871 541 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Adu05g02871 541 MobiDBLite consensus disorder prediction 312 388 - -
Adu05g02871 541 MobiDBLite consensus disorder prediction 190 245 - -
Adu05g02871 541 Coils Coil 402 457 - -
Adu05g02871 541 Pfam Zinc-finger of C2H2 type 57 75 - -
Adu05g02871 541 MobiDBLite consensus disorder prediction 511 541 - -
Adu05g02871 541 MobiDBLite consensus disorder prediction 198 245 - -
Adu05g02871 541 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Adu05g02871 541 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Adu05g02871 541 MobiDBLite consensus disorder prediction 1 44 - -
Adu05g02871 541 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 503 - -
Adu05g02871 541 MobiDBLite consensus disorder prediction 1 29 - -
Adu05g02871 541 SMART c2h2final6 57 79 IPR013087 -
Adu05g02871 541 SMART c2h2final6 98 128 IPR013087 -
Adu05g02871 541 SMART c2h2final6 134 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g02871 Adu-Chr5 97207394 97210855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g02871 393 508 C2H2 Transcription Factor Family AT2G01940 59.322 1.11e-30 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu05g02871 zf-met 0.031 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g02871 K25871 - gmx:100800187 635.95