Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g02846 ATGGTGCTAGGTTGGAGTAGAAGGAGGAAGAACAACAATCACAAGGCTAATGGAAAACCAAGCATGGAGCTAGTGATTCCAAACCATTTCAGGTGCCCAATTTCCTTAGACCTAATGAAAGATCCTGTGACATTATCAACCGGCATAACATACGACAGAGAAAGCGTTGAAAGATGGTTTGATGATGGGAATTTCAAGTGCCCTGTCACAAACCAGATTGTGAAGAACTTTGACATGATCCCAAACCATTCTCTGAGGATGATGATCCAAGATTGGTGTGTGGAGAATAGGCAGCATGGTGTTGAGAGGATCCCAACACCAAAGATCCCAATTAGCCCAACCGATGTCTCTGATCTTCTTCTGCAACTTAAGGAATCTTCACTGCGCTTGGAACAGTTTACTTGCCTTGAATTGATTCAGAAGATGGAGAGATGGGGTGCTGAGAGTGAAAGAAATAAGAGGATTATAGTTGATAACGGAGCACCAGCTGCATTGGCCTCATCATTTGATTCATTTGCAGGTGATTCGGTTGAGAGAAATGTGGGTGTTCTTGATGAGATCCTTTCAGCACTGAAATGGATGTTCCCACTTCAATTGGAGGCTCAGAAATCATTGGGGTCCATTGCATCATTGAGCTGTATGGTTTGGTTCTTGAAGCACCAAGACCTCCCTGGAAAAGAAAAATCCATTGTTGCATTGAAGGAGCTTCTCTCCTTTGGTGACAGTAATAATGTTGAGGCACTTTCAAAGATTGAAGGAGTCAACGAACTCTTGGTGGAATTGGTCAACAAGAGAATTAGTCCAACAATAACAAAGAACTCACTGAGGGTGATCTGGTACATGGTTTCATCATCAAAATCTGAATGTGGTGAGAAGATGAAGATTTCATTTGTGGAGTTGGGATTTGTGAATACCCTTTTGGGAGTCCTAATTGATTCAGAAAAGAGCATTTGTGAGAAGGCTTTGGCAATCTTTGATTGTCTTTGTAGCAGTGAGAAAGGGAGAGAAAGTGCTCTTGGGAATGATCTAACTGTTCCTGTTTTGGTGAAGAAGGTTCTGAGGATTTCTTCACTCAGCACTGATTACTCTGTGTCTGCAATATGGAAGATGTGCAAATTTGGAGAAAGAGGTGATGAAGAAGGGAAGGTTCTTGTTGAGGCTCTTCAAGTTGGTGCATTCCAGAAGCTTCTCTTGGTTTTGCAGGTTGGTTGTGGTGATTCCACAAAGGAAAAAGCCACTGAGCTTCTCAAGTTGATGAATCCTTATAGGGCTGAATTGGAATGCATTGACTCTGATTTCAAGAATCTTAAGAGATCCTTCTAA 1323 0.4203 MVLGWSRRRKNNNHKANGKPSMELVIPNHFRCPISLDLMKDPVTLSTGITYDRESVERWFDDGNFKCPVTNQIVKNFDMIPNHSLRMMIQDWCVENRQHGVERIPTPKIPISPTDVSDLLLQLKESSLRLEQFTCLELIQKMERWGAESERNKRIIVDNGAPAALASSFDSFAGDSVERNVGVLDEILSALKWMFPLQLEAQKSLGSIASLSCMVWFLKHQDLPGKEKSIVALKELLSFGDSNNVEALSKIEGVNELLVELVNKRISPTITKNSLRVIWYMVSSSKSECGEKMKISFVELGFVNTLLGVLIDSEKSICEKALAIFDCLCSSEKGRESALGNDLTVPVLVKKVLRISSLSTDYSVSAIWKMCKFGERGDEEGKVLVEALQVGAFQKLLLVLQVGCGDSTKEKATELLKLMNPYRAELECIDSDFKNLKRSF 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g02846 440 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Adu05g02846 440 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 440 - -
Adu05g02846 440 Gene3D - 118 431 IPR011989 -
Adu05g02846 440 SUPERFAMILY RING/U-box 21 102 - -
Adu05g02846 440 MobiDBLite consensus disorder prediction 1 20 - -
Adu05g02846 440 PANTHER WDSAM1 PROTEIN 9 440 IPR045185 GO:0061630
Adu05g02846 440 CDD RING-Ubox_PUB 30 72 IPR045210 -
Adu05g02846 440 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Adu05g02846 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 104 IPR013083 -
Adu05g02846 440 Pfam U-box domain 26 97 IPR003613 GO:0004842|GO:0016567
Adu05g02846 440 SUPERFAMILY ARM repeat 114 406 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g02846 Adu-Chr5 96648326 96650441 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g02846 3 440 U-box Gene Family AT5G37490 41.741 1.06e-111 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g02846 - - gmx:100794340 689.108