Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g02833 ATGAGCGTTCAAGCTCAGAGAGACCGGAGGAGTAGGTCCAGAGTTCCGCCGCAAGGTGGTCCACGTCAAGAATGGGTTCCCAGAGGATCATCTACCACTACTGCTGTTCAACCATCAAATTTGCAATCTGATCAAACTGCTGATTCTGCTGGTAGTTCCAGTAATGGTGCTGTTCCTGTTGCTGCTGCCACCGCCCCTGTTTCCACTGCCCCGCCTGCGGCGGTTCGCCATAATAGAAGCAATCACGGGGCTGTGAATCAGAGGAGGGAAGTGGAGAAAGGGAGGAGTAGTGGGAATCAGGCTGGGAAGGGGTTGAAGATGAGGGACTCTAGTTTGCCACAGTTGGTGCAGGAGATTCAGGAGAAGCTCATGAAAGGGACTGTGGAATGCATGATTTGTTATGAAATGGTACGGAGGTCTGCCCTTGTTTGGTCTTGTTCGAGCTGCTACTCTATCTTTCACCTCAACTGCATCAAGAAGTGGGCTCGTGCGCCTACGTCGATTGATTTGTCAGCTGAGAAGAATCAGGGCTTTAATTGGCGGTGTCCTGGTTGTCAATCGGTGCAGCTTACTTCGTCAAAGGAGATTCGGTATGTTTGCTTTTGTGGGAAAAGGGTGGACCCTCCATCTGATTTGTATTTGACGCCACATTCATGTGGAGAACCATGTGGGAAGCCTCTTGAGAAGGAGGTGTTCTCTAATGGTGGGAGTAAGGAAGATCGTTGCCCTCATGTTTGTGTCTTGCAATGCCATCCTGGTCCTTGTCCTCCATGTAAAGCATTTGCCCCTCCGCGCTTATGTCCATGTGGGAAGAAGACAATTACCACCCGTTGTTTTGATAGGCAATCTGTTCTTACATGTGGCCAGCGGTGTGAGAAGCTTCTCGAGTGTGGGCGTCACCGATGTGAACGCATTTGTCATGTCGGAGCTTGTGACCCATGTCAGGTTTTGATCAATGCCTCTTGCTTTTGTAGTAAGAAGGTAGAGGTTCTTCCATGTGGGGACATGACTATGAAGGGTGAATTCACAGCAGAAGCTGGAGTTTTTACCTGTGGTTCCAATTGTGGAAGGAAACTTAGTTGTGGTAATCACATGTGCAATGAGATTTGTCATCCAGGAAGTTGCGGGGAGTGTGATTTGTTACCAAGGCATGTTAACACATGCTGCTGTGGGAAAACAAAATTGGATGAGGAACGCAAAAGTTGTTTGGACCCAATACCTACCTGCTCACAAGTTTGTGCCAAATCACTTCCTTGTGGCACACATCATTGTAAAGAGGTGTGTCATGTTGGGGATTGTCCTCCATGCTTGGTTCTTGTGTCCCAGAAGTGTCGTTGTGGTTCAACATCCCGCATCGTGGAATGCTATAAGACAACAGCGGAGAATGAGAAGTTTACTTGTGAAAAGCCTTGTGGAAGAAAAAAGAATTGTGGAAGACATCGGTGTAGTGAACGGTGTTGTCTACTTTCTAATCCCAATAACAATTTAAGTAGTGAATGGGATCCACACTTCTGTTCGATGCCATGTGAAAAGAAGTTAAGATGTGGCCAGCATGCTTGTGAATCACTATGTCACAGTGGCCATTGCCCACCTTGTCTTGAAACCATCTTTACAGATCTGACATGTGCTTGTGGTAGGACTTCAATCCCTCCTCCACTCCCTTGTGGTACGCCACCTCCTTCATGCCAGCTTCCATGTTCAGTTCCTCAGCCTTGTGGCCATATAGCCTTGCACAGTTGCCACTTTGGAGACTGCCCTCCTTGTTCAGTTCCTGTAGCAAAAGAATGTATTGGTGGGCATGTTGTTCTTAGGAACATTCCTTGTGGTTCAAAGGACATTAGATGCAATAAGCTATGTGGGAAGACCAGACAATGTGGCTTACATGCATGTGGGAGAACTTGTCACCCCCCTCCTTGTGATAATCTATCTTGCAGTGTGCAAGGGTTACCAGCGCCTTGTGGGCAAACGTGTGGAGCTCCTAGAAGAGACTGTCGTCATACATGTACAGCTCCGTGTCACCCGTCCACTCCATGCCCAGACGTAAGATGTGAGTTTCCTGTTACAATTACCTGTTCTTGTGGCCGTATAACTGCAAATGTTCCATGTGATGCTGGTGTCAGCAGTAGTAATTATAATGCTGATGCTGTACATGAAGCTTCCATCACTCAAAAATTGCCTATCCCACTACAACCAGTTGATCCAAATGGCAAAAAAGTTCCCCTTGGACAAAGAAAGCTGATGTGCGATGATGAATGTGCTAAGTTAGAGCGCAAGAGGGTTCTTGCTGATGCTTTTGATATTACTACTCCAAATCTTGATTCTCTCCATTTTGGCGACAATTCTGTTGATTTGATTTCTGATTTGTACCGGCGTGATCCTAAATGGGTTATTTCTGTTGAGGAGAGATGCAAATTTTTAGTGCTTGGCAAAAGCAGAAGCACAACTCATGGTTTAAAGGTCCATGTTTTCTGTCCTATGCTGAAGGAGAAAAGAGATGCAGTGAGGGTAATTGCAGATAGATGGAAGCTTGCTGTGAGTGCTGCTGGTTGGGAGCCAAAGCGTTTTATCGTAATTCATGTTACCTCAAAATCAAAAGCCCCAACCCGTGTGCTAGGGGTTAAGGGTACTCCAACTATAAGTGCACCCCTTCCTCCTGCATTTGATCACATGGTAGACATGGACCCTAGGCTTGTTGTTTCATTCCCTGACTTACCAAGGGAGGCTGATATTAGTGCTTTGGTGTTGAGATTTGGTGGCGAGTGTGAGCTTGTTTGGCTGAATGACAAAAATGCCTTGGCTGTTTTTCATGACCCTGCTCGAGCTGCAACGGCAATGAGGAGGTTAGATCATGGTACATTTTATCAGGGAGCTGTTTCGGTTGTGCCCAATGTTGGGGCAACTACCACATCTTCAACTACAGGTGCCTGGGGAGCGGGGACAACGAAAGAAGGAGCACTATCTGTGTTGAAAGGTAATGCATGGAAGAAAGCTGTGGTCCAAGAGTCCAGTTGGAGAGAAGATTCTTGGGGCGATGAAGAATGGACTACTGGATCTGCTAATGTCCAGCAATCTGCTTGGAAAAAAGAAGCACCAATAGCTGCTTCTTTTAACCGTTGGAATTTATTAGACCATGAGTCAGGTCAAAGTTCATCTTCTACAAATGTGAAAAAAGCAGAAGCTTCTGGGAAAAACACTGAAAGCAGTGCTGTCTTGAGGTTGGAGTCTCATGCAGCTGGTTCAAATGAACAAGGGAAACTTGGTGGGAACTTGGATGCAACTGAAGCTTCTGAAGTAGTAGATGATTGGGAGAAGGCTTATGAATGA 3324 0.4645 MSVQAQRDRRSRSRVPPQGGPRQEWVPRGSSTTTAVQPSNLQSDQTADSAGSSSNGAVPVAAATAPVSTAPPAAVRHNRSNHGAVNQRREVEKGRSSGNQAGKGLKMRDSSLPQLVQEIQEKLMKGTVECMICYEMVRRSALVWSCSSCYSIFHLNCIKKWARAPTSIDLSAEKNQGFNWRCPGCQSVQLTSSKEIRYVCFCGKRVDPPSDLYLTPHSCGEPCGKPLEKEVFSNGGSKEDRCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKTITTRCFDRQSVLTCGQRCEKLLECGRHRCERICHVGACDPCQVLINASCFCSKKVEVLPCGDMTMKGEFTAEAGVFTCGSNCGRKLSCGNHMCNEICHPGSCGECDLLPRHVNTCCCGKTKLDEERKSCLDPIPTCSQVCAKSLPCGTHHCKEVCHVGDCPPCLVLVSQKCRCGSTSRIVECYKTTAENEKFTCEKPCGRKKNCGRHRCSERCCLLSNPNNNLSSEWDPHFCSMPCEKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHIALHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHPPPCDNLSCSVQGLPAPCGQTCGAPRRDCRHTCTAPCHPSTPCPDVRCEFPVTITCSCGRITANVPCDAGVSSSNYNADAVHEASITQKLPIPLQPVDPNGKKVPLGQRKLMCDDECAKLERKRVLADAFDITTPNLDSLHFGDNSVDLISDLYRRDPKWVISVEERCKFLVLGKSRSTTHGLKVHVFCPMLKEKRDAVRVIADRWKLAVSAAGWEPKRFIVIHVTSKSKAPTRVLGVKGTPTISAPLPPAFDHMVDMDPRLVVSFPDLPREADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGTFYQGAVSVVPNVGATTTSSTTGAWGAGTTKEGALSVLKGNAWKKAVVQESSWREDSWGDEEWTTGSANVQQSAWKKEAPIAASFNRWNLLDHESGQSSSSTNVKKAEASGKNTESSAVLRLESHAAGSNEQGKLGGNLDATEASEVVDDWEKAYE 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g02833 1107 MobiDBLite consensus disorder prediction 25 59 - -
Adu05g02833 1107 ProSiteProfiles Zinc finger PHD-type profile. 127 188 IPR019787 -
Adu05g02833 1107 MobiDBLite consensus disorder prediction 1005 1026 - -
Adu05g02833 1107 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 75 1104 IPR034078 GO:0003700
Adu05g02833 1107 CDD NF-X1-zinc-finger 287 335 - -
Adu05g02833 1107 CDD NF-X1-zinc-finger 505 548 - -
Adu05g02833 1107 MobiDBLite consensus disorder prediction 1044 1071 - -
Adu05g02833 1107 Pfam NF-X1 type zinc finger 244 259 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 Pfam NF-X1 type zinc finger 515 532 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 Pfam NF-X1 type zinc finger 361 378 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 Pfam NF-X1 type zinc finger 657 682 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 Pfam NF-X1 type zinc finger 297 315 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 Pfam NF-X1 type zinc finger 477 487 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 Pfam NF-X1 type zinc finger 625 645 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 Pfam NF-X1 type zinc finger 419 436 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 Pfam NF-X1 type zinc finger 579 589 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 CDD RING-CH-C4HC3_NFX1 129 186 - -
Adu05g02833 1107 SMART znfxneu3 419 438 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 SMART znfxneu3 664 685 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 SMART znfxneu3 515 534 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 SMART znfxneu3 361 380 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 SMART znfxneu3 477 511 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 SMART znfxneu3 297 316 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 SMART znfxneu3 242 260 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 SMART znfxneu3 572 590 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 SMART znfxneu3 625 646 IPR000967 GO:0005634|GO:0008270
Adu05g02833 1107 MobiDBLite consensus disorder prediction 1 109 - -
Adu05g02833 1107 CDD NF-X1-zinc-finger 562 610 - -
Adu05g02833 1107 CDD NF-X1-zinc-finger 351 394 - -
Adu05g02833 1107 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 75 1104 - -
Adu05g02833 1107 ProSiteProfiles Zinc finger RING-type profile. 130 186 IPR001841 -
Adu05g02833 1107 SUPERFAMILY RING/U-box 120 189 - -
Adu05g02833 1107 MobiDBLite consensus disorder prediction 1044 1107 - -
Adu05g02833 1107 CDD NF-X1-zinc-finger 653 702 - -
Adu05g02833 1107 CDD NF-X1-zinc-finger 409 457 - -
Adu05g02833 1107 CDD NF-X1-zinc-finger 219 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g02833 Adu-Chr5 96428353 96432487 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Adu05g02833 zf-NF-X1 1.4e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g02833 K12236 - zju:107419567 1756.5