Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g02739 ATGGACCCATCCTCGATCCCTCCATCAGCAGGTCCGGCCACCAACACCCTCCCCATGCCAACCATCCCCGCCACCGTGCCCTTCCTCCAGGAGCCGAACAACCACTCTCCTCCGCCGCCGGCCAGCACCGGAACGAACGCTGCTCCCAGCCACCCTCCCTACGCCGAGATGATATACACGGCAATCGAAGCGCTGAAGGAGAAAGAGGGTTCGAGCAAGAGAGCGATAGCGAAGTACATAGAGCAAGTGTACAAGGAGCAGTTACCACCAACTCACTCGACTTTGCTCACTCACCACCTCAACCGACTCAAGAACAACGGCATGCTTCAAATGGTCAAGAAATCATATAGGCTTCCTAGATCTGCTGACGCTACCGACCCTAACCCTTCTCCTTCTGGGTCCTCCAGGCCCAGGGGACGCCCTCGTAAGGCCCAGATTCAGCCCCAGCCCCAATCACAGCTCCCCCAGCTTGAGGCACAGCCTCAGCCACAGCTGGCTGGGAATGTTAATGTTAATGTCCCTCAGCAGCAGCAGCAGAATGCTGAGCCTGTGTGGGCCGCGCTAGGGCTTGCAGATGAGCCTGCGGTGCAGCCTGGCTCGGAGCTGAAGAAGAGGGGTCGTCCGAAGAAGAATGAGGGCGTCCTCCGGGCTCGAAGAACTCGAAGAGGAAGCCTGGTCGTCCTCCGAAGGCTTCGCCTGCTGGTGGTCCGGCTGCTGCTTCCGGGCCGACCGGCCAAGAATCAGCAAGTGGCGACTCCTGTTACGTTCGCTGCTGTTTCTGATCCTGACGCCGCTGTGACTGCATTGCCGCCGGCTCCCGTGGTTGTGCCTGCCGGTGGTGTTCCTGTTGCTGGGTCTCCCAGGCCCAGGGGACGCCCGAAGAGGATTCTTGGTGAGGCTGTCACGGGTGCTATAATTCCTGTTGCTGTCGGTGCCACTGGCCGCGGAAGGGGCCGCGGACGTGGACGCGCTCGCGGTTACGGCTTCGGTACCTTCGGACGTGGACGTGGTCGCGGGCGTGGAAGGCCAGTTGGCCGCCCGAGGAAGGATATAATATTGGCGGGTACTTCACAAAATGAAGATCTCCGGAGGAAGCTTGAACACTTCCAAGCAAAAGTGAAGGAATCTCTGGCCGTGCTTAGGCCTTACTTCAACCATGAAAGTCCAGTAACTGCACTTGCAGCACTCCAAGAATTGGATGTACTGGGAACTATGGACCTCAATGCACCCCTAAGAGATGAAACTATTCCTCAACAACCACAGCAGCAGCTGCCTCTGCAGCAGCAGCCGCCACCGATGCAGCCGTCGCCATCACCACCACCACCACCTCAACCGCACCAGCAGCTGCCACAACCACAGCTCATGTTCCCACAGCAATTCCACCAGTTTAACCTGCCGCAGTTCCAGCAGCAGCCCCCGCAGTATCAGCACCAACACCAGCCCCCACCCCAGCAGCAACTGTTCCATCCATAG 1473 0.5906 MDPSSIPPSAGPATNTLPMPTIPATVPFLQEPNNHSPPPPASTGTNAAPSHPPYAEMIYTAIEALKEKEGSSKRAIAKYIEQVYKEQLPPTHSTLLTHHLNRLKNNGMLQMVKKSYRLPRSADATDPNPSPSGSSRPRGRPRKAQIQPQPQSQLPQLEAQPQPQLAGNVNVNVPQQQQQNAEPVWAALGLADEPAVQPGSELKKRGRPKKNEGVLRARRTRRGSLVVLRRLRLLVVRLLLPGRPAKNQQVATPVTFAAVSDPDAAVTALPPAPVVVPAGGVPVAGSPRPRGRPKRILGEAVTGAIIPVAVGATGRGRGRGRGRARGYGFGTFGRGRGRGRGRPVGRPRKDIILAGTSQNEDLRRKLEHFQAKVKESLAVLRPYFNHESPVTALAALQELDVLGTMDLNAPLRDETIPQQPQQQLPLQQQPPPMQPSPSPPPPPQPHQQLPQPQLMFPQQFHQFNLPQFQQQPPQYQHQHQPPPQQQLFHP 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g02739 490 PANTHER HISTONE H1 33 421 - -
Adu05g02739 490 MobiDBLite consensus disorder prediction 451 490 - -
Adu05g02739 490 MobiDBLite consensus disorder prediction 1 52 - -
Adu05g02739 490 Coils Coil 359 379 - -
Adu05g02739 490 MobiDBLite consensus disorder prediction 315 347 - -
Adu05g02739 490 PRINTS AT-hook-like domain signature 285 295 IPR017956 GO:0003677
Adu05g02739 490 PRINTS AT-hook-like domain signature 200 211 IPR017956 GO:0003677
Adu05g02739 490 PRINTS AT-hook-like domain signature 135 145 IPR017956 GO:0003677
Adu05g02739 490 MobiDBLite consensus disorder prediction 32 46 - -
Adu05g02739 490 PRINTS Histone H5 signature 201 220 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Adu05g02739 490 PRINTS Histone H5 signature 64 81 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Adu05g02739 490 PRINTS Histone H5 signature 37 58 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Adu05g02739 490 CDD H15 48 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Adu05g02739 490 MobiDBLite consensus disorder prediction 424 450 - -
Adu05g02739 490 MobiDBLite consensus disorder prediction 7 31 - -
Adu05g02739 490 SUPERFAMILY "Winged helix" DNA-binding domain 48 122 IPR036390 -
Adu05g02739 490 SMART h15plus2 48 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Adu05g02739 490 MobiDBLite consensus disorder prediction 420 490 - -
Adu05g02739 490 Pfam linker histone H1 and H5 family 51 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Adu05g02739 490 Gene3D - 46 128 IPR036388 -
Adu05g02739 490 PANTHER HISTONE H1-LIKE 33 421 - -
Adu05g02739 490 MobiDBLite consensus disorder prediction 119 161 - -
Adu05g02739 490 MobiDBLite consensus disorder prediction 145 161 - -
Adu05g02739 490 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 50 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Adu05g02739 490 SMART AT_hook_2 287 299 IPR017956 GO:0003677
Adu05g02739 490 SMART AT_hook_2 318 330 IPR017956 GO:0003677
Adu05g02739 490 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Adu05g02739 490 SMART AT_hook_2 202 214 IPR017956 GO:0003677
Adu05g02739 490 SMART AT_hook_2 337 349 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g02739 Adu-Chr5 94966261 94973318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g02739 57 169 Single Myb Histone (SMH) Gene Family AT1G49950 30.252 2.03e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g02739 - - lang:109358509 308.531