Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g02643 ATGATGGCTCATCACCAATTCACAGAAGATTTTCAAAGCATGATCATGAAACCTTTCTTGGATATTGATCCAAGCATGGATCTCATCAACCAGTTCATAGGTTTGAACACAACAACAACAACAACAACACATATGAACATGTGTGACAACTTGTTTGGATCTCATCATCATCATCATCATCATCAAGATGATTTTCCAGGAAACTTGGAAGAAAGTTTCCATCAAAATCATCATCATCATGTCAACAACAACAATGCATCATCAGTAGTAGTCCCAGTAATTTCTTCTTCCCTTCTCAATTATTATCCATCAGAAAATGAAGAAATCCATGAAGGTAAAAAGAGAAAAGCAACTACTTCAGGAAACTCAACTCCTGCAGCTTCTCATCATAGTGAAAGCAAGATTATTAAAAATAATGGTTGTGGTGGAAAAGGTAAGAGAGTGAAGAGCAATAAAACAGAAGAAGAAGAGGAGAAGAAACAAAAGGAAGTGGTTCATGTCAGAGCAAGAAGAGGTCAAGCCACTGATAGTCACAGCATAGCTGAAAGGGTTAGAAGAGGAAAAATCAATGAAAAATTAAGGTGCCTGCAAAACATTGTTCCAGGATGTTACAAGACCATGGGCATGGCGGTTATGTTGGATGAAATCATAAACTATGTTCAATCCTTGCAACATCAAGTAGAGTTCCTTTCTTTGAAGCTCACAGCAGCAAGTACCTTTTATGACTTCAATTCAGAGACAGATGCTTTGGAAACAATGCAGAGAGCGAGGGCATCCGAGGCAAAAGAGTTAGGCAAGTATGGGAAAGAAGGGCATGGAGGAGTTTCTTGCTATCAACCAAATTGGCCTCTTGTTTGA 858 0.3858 MMAHHQFTEDFQSMIMKPFLDIDPSMDLINQFIGLNTTTTTTTHMNMCDNLFGSHHHHHHHQDDFPGNLEESFHQNHHHHVNNNNASSVVVPVISSSLLNYYPSENEEIHEGKKRKATTSGNSTPAASHHSESKIIKNNGCGGKGKRVKSNKTEEEEEKKQKEVVHVRARRGQATDSHSIAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSETDALETMQRARASEAKELGKYGKEGHGGVSCYQPNWPLV 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g02643 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 239 IPR036638 GO:0046983
Adu05g02643 285 SMART finulus 179 229 IPR011598 GO:0046983
Adu05g02643 285 MobiDBLite consensus disorder prediction 118 135 - -
Adu05g02643 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 223 IPR011598 GO:0046983
Adu05g02643 285 MobiDBLite consensus disorder prediction 107 163 - -
Adu05g02643 285 Pfam Helix-loop-helix DNA-binding domain 177 224 IPR011598 GO:0046983
Adu05g02643 285 Gene3D - 169 240 IPR036638 GO:0046983
Adu05g02643 285 CDD bHLH_AtBPE_like 164 248 - -
Adu05g02643 285 MobiDBLite consensus disorder prediction 147 163 - -
Adu05g02643 285 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 6 283 IPR024097 GO:0006355
Adu05g02643 285 PANTHER TRANSCRIPTION FACTOR BEE 1 6 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g02643 Adu-Chr5 93230511 93232507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g02643 7 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 46.465 8.86e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu05g02643 HLH 0.00011 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g02643 - - adu:107490384 519.62