Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g02623 ATGAAAGGTTCAAGTAGTGGTGCATTGGGAGCAAAAACAGCAAGAGCGTGTGATAGCTGCCTAAGAGTAAGAGCAAGGTGGTTCTGTGCGGCAGATGATGCTTTCCTCTGCCATGGCTGCGATAACTTGGTTCACTCGGCCAACCAGTTAGCCAGCCGCCATGAAAGGGTTAGGCTCCAAACTTCATCTTCCTCCGCCAAGATAACAACAACTGCATGGCATAGTGGCTTCACGCGCAAGGCAAGAACCCCGCGTCATCACAACAAGAGCACTTTCTTGATGCAGCAGCAACAAGATGCTGAGAAAGAAGAAGAAGCGGTTTTCAATAACTACCAGGGTTCCGTGTTTCTGGATCCTGTTGTGCCAGATCTTGGAAGCGAAGATATTTATGAGAGTGAGGAGCAGATTCTGTGCCGCGTGCCGGTGTTTCACCCTTTTGATGATGATTCTGTGCTTTGTAGTGTGCACAATAATGAAATAATGAAGAAGAAAAAGAAGAAGATGAAGAAGATGAACAATGATGATGGTGAAGAAGAAGGAGAAGGTGAAGTACCGTGCACGTTTGGATTGGAGAATTTCTCTGATCTTGCTGATGTAGAAAACTTGCTCCATATTGAGGATGATTCAACCATGATTAAGGTTAAGGATGAATTACAAGTTACTAATAATGATGATGATTGTAATCTGGAGTCCATTCTTGACTGGAATATTGACACATCAGATCAATCAATGATGATGGCAGTAGTAGAACATGATCAAGAAGAGGAGGAAAATAATAATAAAGTGGAAATAATAAAGAAAGAGAAGTTTTTGAGGCTAAATTATGAAGAGGTTATTTCTGCTTGGGCAAGTCAAGGATCTCCATGGACTACAGGAAATCCACCTAACTTCAACTTTGATGATTGTTGGCCCCATTACATGGGTTCAAGTGGTGGCGTGGATAATAATGTTGCATGGTGTGATGGGGAGGAAGTAAGAAACATGAGATGGCATCAAATAGGGGGAGTTGATGATGGGGGGAGAGAAGCAAGAGTATCAAGGTACCGAGAAAAGAGAAGAACGCGTTTGTTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGCTCAATGCTGAGAAGAGACCAAGAATGAAGGGTCGTTTTGTGAAGAGGACATCTTCATCATCATCATCCTTTGTTGAAGGAGCCATTACTACTACTTAA 1200 0.4258 MKGSSSGALGAKTARACDSCLRVRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTSSSSAKITTTAWHSGFTRKARTPRHHNKSTFLMQQQQDAEKEEEAVFNNYQGSVFLDPVVPDLGSEDIYESEEQILCRVPVFHPFDDDSVLCSVHNNEIMKKKKKKMKKMNNDDGEEEGEGEVPCTFGLENFSDLADVENLLHIEDDSTMIKVKDELQVTNNDDDCNLESILDWNIDTSDQSMMMAVVEHDQEEEENNNKVEIIKKEKFLRLNYEEVISAWASQGSPWTTGNPPNFNFDDCWPHYMGSSGGVDNNVAWCDGEEVRNMRWHQIGGVDDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSSSSSSFVEGAITTT 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g02623 399 CDD Bbox1_BBX-like 16 59 - -
Adu05g02623 399 Pfam B-box zinc finger 14 57 IPR000315 GO:0008270
Adu05g02623 399 ProSiteProfiles Zinc finger B-box type profile. 12 59 IPR000315 GO:0008270
Adu05g02623 399 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 389 - -
Adu05g02623 399 Pfam CCT motif 341 383 IPR010402 GO:0005515
Adu05g02623 399 SMART bboxneu5 12 59 IPR000315 GO:0008270
Adu05g02623 399 ProSiteProfiles CCT domain profile. 341 383 IPR010402 GO:0005515
Adu05g02623 399 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 5 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g02623 Adu-Chr5 92823855 92825865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g02623 1 383 C2C2-CO-like Transcription Factor Family AT1G25440 41.458 3.50e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Adu05g02623 zf-B_box 1.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g02623 - - aip:107644315 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g01969 03 35917949 35919841 Adu05g02623 05 92823855 92825865 PCT