Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g02524 ATGTGTTCTCCAGATTATAACATGGAAGACGAACATGTGCCTCCAGAGGACTTTGTCTGTCCATTAACAAGTAACCTATTTGATGATCCTGTGACCCTTGAGACAGGACACACATTTGAACGCCATGCTATTGAAGAATGGCTTAAAAGGGGAAACTTAACTTGTCCCATCACTCGCAAGAAGCTGCGAAAGACTCGCTTACCGAAAACAAATCTCGTGCTCAAACAAATAATCTCAAGCTGGAAAGAACAAAATCTCAATTCAGTAGTCGAAATGCCATGTGACAGTCCACATGGAGATACCGAGCTGAAAGTGGAGTGTTCAACTTCTCCTAACAGTGTCATATCAGAGGCGACGCTTGACGGAATGATGAGCGAGTTGCGCAATGCAATCAACAAACTGTATATGTCAGAGGTGCTTGCGGAATCTGAAATGGCTGTGCTTCAAATTGAGAAGATTTGGAGAGAACTGAACCTAATAGTTGTTGATATCCATAGTATGCTATCAAAACCTGCTATCATCAATGGATTCATGGGGGTGCTTCTTAAGTCTTTTGATCCAAAGGTGCTGCAAACAGCAGTTTTCTTGTTAACTGAGATGGGTTGCGTAGACAGTAATGTAATTCAGACGCTTAGCCATGTTGACACTGATGTAGAATGGATCAAGACTCTTTTCAAGAAAGGTGTAAAAGAGGCTGTGGTGTTAATGTATCTTCTGAAACCTTCCACTATCATTCTTTCAGATATGGCAACAGTGGAGGCTCTCATTGCAGTTGTAAATATGAAAGAGGAAGAATTTCTAGAGATGTGTTTGAGTCCCAAAACGGCTGCAGTGCTTTTACTTGCGCAGGTTGTTGGAAGCAGTGAAGAGAGCATTGCATCTTCAGTTGCACAGGCTGTGTTATCCGAAAGAGAAATTGAAGCTATAGTTGGCAGTTTGGGAGCAGAATGGGCAGAGGAGAGGGTTGCTGCGGTTGAGATCTTGTTAAAATGCATGCAAGAAGATGGTACTTGCAGGAATATCATTGCTGATAAGGCACAATTATCTACCTTTTTGGAAAGCCTTGTAGGTGCAACTGAGGGAGAACTTTTCAAGATAGTTAAATTTTTATCTGAGTTGGTAAAACTGAATAGGAGAACATTCAATGAACAAATCCTTCACATTATAAAGGAAGAAGGTCCTTTAAGCACAATGCACACTCTCCTCATTTCTCTGCAGACAGCTCATCAATTCCATTTTCCAGTGTTGGCTGGCCTCTTACTCCAACTTGATCTTCTGGTGGAGCAAACAAAGATGAGCATATACTCTGAGGAGGCAATAGATACTCTTATCTCATGCTTGAGAAAGACTGATTACCCTGCTGTCCAATTAGAAGCTGCCAAGATAATTGCGTCACTGCAAGGGAGATTCAACTATGCCGGAAAGTCTCTTAGCCGAGAAGTCCTTCTTGAACGTGCTGGTCTTGACAGAAGCTACAACAATTTTCTACAGATGGACCAGATCAGCAACTTCAACGAAGGAATTGAAGCATCTATGAAAGAAGAGAATGCAGCTGAGGACTGGGAAAGAAAAGCTGCATCAGTTCTAGTTAGCCATGACTGTGGTTTACTTTTTGAGGCTTTAGCAGATGGCTTGAAGAGCCAAAATGAAGAACTACGCTCTGCATGCTTTATATCAGCTACATGGCTCATATATATGATCACCATTCTACCAGATACTGGAATACAAGGGGCAGCACGAGTCTTCTTTCTCAAACACTTCATATTCATATTGAAATCTGCCGAGGACACTGAAGACAGAATCCTTGCCATGCTTGCTCTTAAGAGCTTTCTTCATTTTGATGATGGCTTACGTGATCTTACTTCCTATGCGAAGGATATCCTCAAAGCACTGAGAGAATTAGAGGGGTTCTCTCCCATGGCATCAGAAATTATGAAGGTTTTGGTTGAAGAACCTGAATCTAAAGCAGACATCTGGATTCATAAAGAGGTAACTAAAATAGATTGCAGTGGGAATGGAGAAGTTCTTTCTATCATTTGCTTTGAAGATAAAATCTTTTCAGGGCATTCAGATGGAACTATTAAGGTGTGGAAAGTAAAGGAAAGCATAGTCGATCTCTTGCAAGAGATTAAAAGGCATACGAAGGATGTTACAAGCTTGGCAATTTCGGAATCTGGCGACAGATTATACAGCGGTTCACTTGATAGAACTGTAAAGGTCTGGTCCATTGAAATGGCTGCAATACATCATGTACAAGAACATGATATGAAGGACCACATTCATAATTTAGTTGTGACCAATAGTATGTGTTGCTTCAGTCCTCATGGAAGTGGCATCAAGGTTAAGTCATGGAATGGAGAATCTAAGTTGTTAAATTCTAATAAACATGCAAAGTGCTTGGCTCTTGTTCAGGGGAAATTATACTGTGGATGCCATGATAGCAGCATTCAGGAGATCGATTTAGCCACAGGAAAACTCATCAGCATTCAAAGTGGTTCCAAAAAGTTACTTGGGAAAGCAAATCCTATTCATGCACTGAAACTTCATGGTGAATTCATATACGCTACTAGCTCTTCCTTTGATGGATCTGTCATAAAGATATGGAACACATCCAATAATAATCGTATACATATGGTTGGATCATTGCAAACTTCATTGGAAGTGCGAGCTATGGCAGTAAGCTCAGAACTAATTTATTTGGGGTGTAAGGGAGGAGCTGTGGAAATCTGGGATAGAAAGAAATACAATAGAATTAACACATTGCACACCGGATCCAATTATAGGGTTGTTTGCATGGCTTTGAATAGCACTGAGGATATTTTGGTAATTGGAACCTCGGACGGTCAAATTCAGGCATGGGGTGTCAAGTAA 2871 0.4089 MCSPDYNMEDEHVPPEDFVCPLTSNLFDDPVTLETGHTFERHAIEEWLKRGNLTCPITRKKLRKTRLPKTNLVLKQIISSWKEQNLNSVVEMPCDSPHGDTELKVECSTSPNSVISEATLDGMMSELRNAINKLYMSEVLAESEMAVLQIEKIWRELNLIVVDIHSMLSKPAIINGFMGVLLKSFDPKVLQTAVFLLTEMGCVDSNVIQTLSHVDTDVEWIKTLFKKGVKEAVVLMYLLKPSTIILSDMATVEALIAVVNMKEEEFLEMCLSPKTAAVLLLAQVVGSSEESIASSVAQAVLSEREIEAIVGSLGAEWAEERVAAVEILLKCMQEDGTCRNIIADKAQLSTFLESLVGATEGELFKIVKFLSELVKLNRRTFNEQILHIIKEEGPLSTMHTLLISLQTAHQFHFPVLAGLLLQLDLLVEQTKMSIYSEEAIDTLISCLRKTDYPAVQLEAAKIIASLQGRFNYAGKSLSREVLLERAGLDRSYNNFLQMDQISNFNEGIEASMKEENAAEDWERKAASVLVSHDCGLLFEALADGLKSQNEELRSACFISATWLIYMITILPDTGIQGAARVFFLKHFIFILKSAEDTEDRILAMLALKSFLHFDDGLRDLTSYAKDILKALRELEGFSPMASEIMKVLVEEPESKADIWIHKEVTKIDCSGNGEVLSIICFEDKIFSGHSDGTIKVWKVKESIVDLLQEIKRHTKDVTSLAISESGDRLYSGSLDRTVKVWSIEMAAIHHVQEHDMKDHIHNLVVTNSMCCFSPHGSGIKVKSWNGESKLLNSNKHAKCLALVQGKLYCGCHDSSIQEIDLATGKLISIQSGSKKLLGKANPIHALKLHGEFIYATSSSFDGSVIKIWNTSNNNRIHMVGSLQTSLEVRAMAVSSELIYLGCKGGAVEIWDRKKYNRINTLHTGSNYRVVCMALNSTEDILVIGTSDGQIQAWGVK 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g02524 956 Gene3D - 655 802 IPR015943 GO:0005515
Adu05g02524 956 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 955 - -
Adu05g02524 956 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 92 IPR013083 -
Adu05g02524 956 Gene3D - 803 956 IPR015943 GO:0005515
Adu05g02524 956 Gene3D - 166 642 IPR011989 -
Adu05g02524 956 ProSiteProfiles U-box domain profile. 13 88 IPR003613 GO:0004842|GO:0016567
Adu05g02524 956 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 710 744 - -
Adu05g02524 956 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 955 - -
Adu05g02524 956 ProSiteProfiles Trp-Asp (WD) repeats profile. 922 956 IPR001680 GO:0005515
Adu05g02524 956 Pfam U-box domain 15 85 IPR003613 GO:0004842|GO:0016567
Adu05g02524 956 Pfam WD domain, G-beta repeat 707 742 IPR001680 GO:0005515
Adu05g02524 956 Pfam WD domain, G-beta repeat 661 698 IPR001680 GO:0005515
Adu05g02524 956 ProSiteProfiles Trp-Asp (WD) repeats profile. 710 744 IPR001680 GO:0005515
Adu05g02524 956 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 922 956 - -
Adu05g02524 956 SUPERFAMILY RING/U-box 12 86 - -
Adu05g02524 956 SUPERFAMILY ARM repeat 121 716 IPR016024 -
Adu05g02524 956 SMART Ubox_2 17 81 IPR003613 GO:0004842|GO:0016567
Adu05g02524 956 SUPERFAMILY WD40 repeat-like 682 953 IPR036322 GO:0005515
Adu05g02524 956 CDD RING-Ubox_PUB 18 60 IPR045210 -
Adu05g02524 956 SMART WD40_4 914 954 IPR001680 GO:0005515
Adu05g02524 956 SMART WD40_4 660 698 IPR001680 GO:0005515
Adu05g02524 956 SMART WD40_4 875 911 IPR001680 GO:0005515
Adu05g02524 956 SMART WD40_4 823 869 IPR001680 GO:0005515
Adu05g02524 956 SMART WD40_4 703 742 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g02524 Adu-Chr5 90705089 90710843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g02524 3 206 U-box Gene Family AT1G71020 29.902 1.03e-15 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g02524 - - gmx:100808867 1262.28