Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g02519 ATGTCTGTGCCATTAGAGCAAGACTATGTAGTAGGCTTACCTGAGCTTCCTTCAATGGAAACCACAGAAAAAACCCCTCAAAAAACAACAAAAACCAGTGGTAGCTTCTTGAACCTTAAGGCCACTGAACTTAGACTTGGCTTGCCAGGTTCAGAGTCACCAGAAAAAGATGAAGATGATGGTGTGTGTTCTGGGAAGTTGAATCTCTCTGGAAATGGTGGATCAGAAATGGGTATTGGTAAAGATGGTAACTTGTTCACTCCTCCAAGAGAAAGAGAACAAGCATCTGTTATGAAAGAGTCAACAAAGCCACTCAGTCAGAACCACAAGCCTCAGATATCTTCTGCTACTGCTGCAAAAGAACAGGTAGTGGGATGGCCACCAATCCGTTCATTCAGGAAGAACTCAATGGCAACTTCTTTGATGAATGATGAAGTTGATGCATCAGAAGCCAACTCTGGTAATTGCCTTTATGTCAAAGTCAGCAAGGATGGTGCTCCATTCTTGAGGAAAGTTGATCTCAAAAACTTTGATTCTTATAGGGATCTCTCTTCAGCCCTCAACAACATGTTTACTTGCTTTACAATCAGTCAATGTGGTACTCATGGAGTTTCTAGTAGAGACAAGTTGAGTGAAAGTAAGTTGATGGATCTGCTTCATGGTTCAGAATATGTTCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTAATTCTTGCAAGAGACTGAGGATAATGAAGAGTTCGGAAGCTATTGGACTAGCACCAAGAGCCATGGAAAAACGTTTTGTTGATGATGAACCTGGTCCTTCCACTAGACCTCCTATTGATGGGGGAGATGTACAAGTTGATAATAATGGTAATGATTTGCATGATCAACCTACACCTCCACCTGAGGTGCCAGATGTTGAAGTTTCACCTGAACCACCAGTTGAGCCtgaattgagaaaatctactagagagcgtcatccttctcagaaatactctcctcatgagccggatatTGCTCATGCCGTTGGAGTTGTTAGTCGGTTTCTCTCTAATCCTGGCAAGGAACACTGGCAAGCAGTGAAGTGGATTCTCAGATACCTTAATGGTACTTCCAGAGTTTGTTTATGCTTTAGAAGTGGCCAACCTGTGTTGGATGGTTACACAGATGCGGATATGGCTGGGGATCTTGATTCAAGAAAGTCTACCTCTGGTTATATGATGACTTTTGCAGGGGGAGCTGTGTCGTGGCAATCCCGACTTCAGAAATGTGTTGCTTTGTCTACTACAGAGGCAGAATACATTGTTGttgttgaagcttttaaggaactcttgtggatgaagaaatttctacaagagttaggcatcaatcaagagaagtttgtgttattctgtgacagtcagagtgctatccatctcagctag 1443 0.3763 MSVPLEQDYVVGLPELPSMETTEKTPQKTTKTSGSFLNLKATELRLGLPGSESPEKDEDDGVCSGKLNLSGNGGSEMGIGKDGNLFTPPREREQASVMKESTKPLSQNHKPQISSATAAKEQVVGWPPIRSFRKNSMATSLMNDEVDASEANSGNCLYVKVSKDGAPFLRKVDLKNFDSYRDLSSALNNMFTCFTISQCGTHGVSSRDKLSESKLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTNSCKRLRIMKSSEAIGLAPRAMEKRFVDDEPGPSTRPPIDGGDVQVDNNGNDLHDQPTPPPEVPDVEVSPEPPVEPELRKSTRERHPSQKYSPHEPDIAHAVGVVSRFLSNPGKEHWQAVKWILRYLNGTSRVCLCFRSGQPVLDGYTDADMAGDLDSRKSTSGYMMTFAGGAVSWQSRLQKCVALSTTEAEYIVVVEAFKELLWMKKFLQELGINQEKFVLFCDSQSAIHLS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g02519 480 MobiDBLite consensus disorder prediction 1 40 - -
Adu05g02519 480 SUPERFAMILY CAD & PB1 domains 150 257 - -
Adu05g02519 480 MobiDBLite consensus disorder prediction 99 119 - -
Adu05g02519 480 Pfam AUX/IAA family 42 267 IPR033389 -
Adu05g02519 480 ProSiteProfiles PB1 domain profile. 156 258 IPR000270 GO:0005515
Adu05g02519 480 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 18 56 - -
Adu05g02519 480 MobiDBLite consensus disorder prediction 20 39 - -
Adu05g02519 480 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 63 268 IPR003311 GO:0005634|GO:0006355
Adu05g02519 480 MobiDBLite consensus disorder prediction 99 120 - -
Adu05g02519 480 MobiDBLite consensus disorder prediction 304 318 - -
Adu05g02519 480 MobiDBLite consensus disorder prediction 319 340 - -
Adu05g02519 480 CDD RNase_HI_RT_Ty1 393 480 - -
Adu05g02519 480 Gene3D - 150 269 - -
Adu05g02519 480 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 63 268 - -
Adu05g02519 480 MobiDBLite consensus disorder prediction 269 342 - -
Adu05g02519 480 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 18 56 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g02519 Adu-Chr5 90605751 90613992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g02519 344 480 Receptor kinase-like Gene Family AT4G23160 37.410 5.62e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Adu05g02519 AUX_IAA 1.7e-82 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g02519 K14484 - gmx:100803754 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g02519 05 90605751 90613992 Adu05g02519 05 90605751 90613992 ECH
Adu03g01906 03 33664072 33666363 Adu05g02519 05 90605751 90613992 PCT