Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g02343 ATGGACAAAAAACCGTGCAACTCATCTCAAGACCCTGAAGTGAGAAAGGGACCTTGGACAGTGGAAGAAGATTTGATTTTGATCAACTATATTGCAAATCATGGAGAAGGTGTTTGGAACTCCTTAGCCAAAGCCGCTGGTCTTAAACGCACTGGAAAGAGTTGTAGACTCAGGTGGCTAAACTACCTTCGCCCTGATGTTAGAAGAGGAAATATCACACCTGAGGAACAACTTTTGATCATGGAGCTTCATGCAAAATGGGGAAACAGTACTGACAATGAGATTAAGAATTTCTGGAGGACAAGGATCCAGAAGCATATCAAGCAAGCTGAGAACTTTCAATCACAACAAAGTAATTCTGATCATGATCATCAGATCAATGATAATAATTACCATCATCATCATCATCATAATAGTTATGCAAGCACTTCTAGCCATGTTTCAAACATGGCTGAGGCAATGGAGATTTCATATTCTTCTCCACCCACATACCAAGGAACTACATTGGAGCCATTCACAACTCATCACAATCATCAACAACAACAACAACAACATCATCATCATCATCATCAATACCCTTCAACAATCCCTACTACTGACCAATCTAGTTGTTGTACCAATGACAACAACAACAACTATTGGAGCATGGAGGATCTCTGGTCCATGCAATTACTCAATGGGGATTAA 687 0.4003 MDKKPCNSSQDPEVRKGPWTVEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNSTDNEIKNFWRTRIQKHIKQAENFQSQQSNSDHDHQINDNNYHHHHHHNSYASTSSHVSNMAEAMEISYSSPPTYQGTTLEPFTTHHNHQQQQQQHHHHHHQYPSTIPTTDQSSCCTNDNNNNYWSMEDLWSMQLLNGD 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g02343 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Adu05g02343 228 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Adu05g02343 228 SMART sant 68 105 IPR001005 -
Adu05g02343 228 SMART sant 15 65 IPR001005 -
Adu05g02343 228 CDD SANT 18 63 IPR001005 -
Adu05g02343 228 SUPERFAMILY Peptide methionine sulfoxide reductase 135 202 IPR036509 GO:0008113
Adu05g02343 228 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 225 - -
Adu05g02343 228 MobiDBLite consensus disorder prediction 111 144 - -
Adu05g02343 228 MobiDBLite consensus disorder prediction 168 203 - -
Adu05g02343 228 Gene3D - 16 68 - -
Adu05g02343 228 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Adu05g02343 228 SUPERFAMILY Homeodomain-like 13 99 IPR009057 -
Adu05g02343 228 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 225 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g02343 Adu-Chr5 86890268 86894404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g02343 4 228 MYB Transcription Factor Family AT3G01530 47.280 1.27e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Adu05g02343 Myb_DNA-binding 5.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g02343 K09422 - gmx:778046 292.737