Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g02338 ATGAATGTGGCAAACGGAGATAGAGTGGTGATATGGGACTTTTCTAACAAAACAGTGACTACAACAACAACTACTCATCATGCTGCTCCGCTGCTGGTTACAGAGAAGGATCCAAGGGCTAATGCCAATGCTCGTCCCCGCCGCCGCAACCACATTCGTAGCCAAAGGGCTAATGCTAATGCGCCTCCCACTGGCAACCACATTCATGGTCAATGGACACCGGATCAGGACATGACTCTGGAAGCATTAGTGAATGAGAATAAGCTGAAGAAATGGTCACAAATTGCAAAATTACTTGGTGGCAGGAATGGGAAGCAGTGTAGAGAGAGATGGCACAACCATCTCCAGCCAAATCTTAAGAAAGGGCCATGGACTTGGAAAGAAGACATGATTCTGATCAAAGCCCACAAGGAAGCTGGTGGAAACAAATGGGCTGAGATTTCAAAGAGATTGCCAGGTAGGACTGATAACTCCATCAAGAATCGTTGGAATACAATTAAGAGGAGTAGGCCCACAAAAAAGTACAAGTTCATTAAGCCCAATAACAACAATAATTTTGATGGGTCAAAAATGCTCAAAGCCTATATCGATGCAGTGGCTGCAGCCCAAGCAGAAGTAGCAACTTTATCAAAGTCAAAGTCAAAGAATGATTCCAACAAGAATAAGGGCAAGGCCAGGGTTAAAATTGATCTCAATTCTATTCCCTTGGAGTTTCCAAATGATGACGTCATCAACATTCATGGAAGTGATGTTGGTGGTGAATATGGCAACTGGGTTTAG 780 0.4385 MNVANGDRVVIWDFSNKTVTTTTTTHHAAPLLVTEKDPRANANARPRRRNHIRSQRANANAPPTGNHIHGQWTPDQDMTLEALVNENKLKKWSQIAKLLGGRNGKQCRERWHNHLQPNLKKGPWTWKEDMILIKAHKEAGGNKWAEISKRLPGRTDNSIKNRWNTIKRSRPTKKYKFIKPNNNNNFDGSKMLKAYIDAVAAAQAEVATLSKSKSKNDSNKNKGKARVKIDLNSIPLEFPNDDVINIHGSDVGGEYGNWV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g02338 259 SUPERFAMILY Homeodomain-like 95 170 IPR009057 -
Adu05g02338 259 SMART sant 120 169 IPR001005 -
Adu05g02338 259 SMART sant 68 117 IPR001005 -
Adu05g02338 259 SUPERFAMILY Homeodomain-like 61 111 IPR009057 -
Adu05g02338 259 CDD SANT 72 115 IPR001005 -
Adu05g02338 259 Gene3D - 71 120 - -
Adu05g02338 259 Pfam Myb-like DNA-binding domain 121 166 IPR001005 -
Adu05g02338 259 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Adu05g02338 259 Gene3D - 123 185 - -
Adu05g02338 259 MobiDBLite consensus disorder prediction 38 69 - -
Adu05g02338 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 171 IPR017930 -
Adu05g02338 259 ProSiteProfiles Myb-like domain profile. 116 167 IPR001005 -
Adu05g02338 259 MobiDBLite consensus disorder prediction 55 69 - -
Adu05g02338 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
Adu05g02338 259 PANTHER MYB PROTEIN-RELATED 46 205 - -
Adu05g02338 259 CDD SANT 123 167 IPR001005 -
Adu05g02338 259 ProSiteProfiles Myb-like domain profile. 70 115 IPR001005 -
Adu05g02338 259 PANTHER MYB DOMAIN PROTEIN 100-RELATED 46 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g02338 Adu-Chr5 86779196 86782275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g02338 68 222 MYB Transcription Factor Family AT4G18770 45.806 3.95e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu05g02338 Myb_DNA-binding 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g02338 K09422 - aip:110263065 474.552