Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g02315 ATGGACGTTACAAAACGTAGCTCCGTCTTCACCCAAATCGCTTCAAGGGAGCTCAATTCCTTCCGAGTTCGCAAACGGCCTTACATGGATGGATTCGTCACTGGATTCGTGGAACACGGTGCTGTTGGAGTTCACCACAGCGAAGATGGTACCATTCCCATGTCCCTCTCTTTCTGTAAGACTCCCAAGTATTCACACATTCTGGCTTTATCTGATGAAGATGGATACCTAACCTTATTTGATTCGCGTAAAAAATTCTCCGTATTATCCTCGTTTGAAGAAAATGCAGAGAAAGCGAAGATCTGTGAGTGGGTTTCTCATCTTAATGCCGTGTTTGATATCTGTTGGATTAAGGAAGACACACAGATACTCACAGCTTCTGGTGATCAAACAATGAAGGTATGGGATGTACAAGAAAAGAAATGTATTGGAGTGTTGACGGGGCACACAGGGAGTGTGAAGTCTATGTGTGCTCATCCAAATAATGCTGATATTATTGTCTCTGGTTCAAGAGATGGATCCTTTTGTCTCTGGGACTTAAGATGCAAATCGGCAACTAGGGGTAGACATGGAGAAGTTAGCATATGTTCAACGGCTGTTGTCAAAGGAGCACATCTTTCATCTCAAGCAAAACGTGTCAGAAAGGGCAAGGCCAAGTCCATGAGCATTACATCTGTTCTTTGTCTTAAGGACCAGGTTTCCATAGCCACTGCAGGGGCAGTGGATAGTGTGTTGAAGTTTTGGGATACCAGAAATTTGAAAAGTTTTGTTACACAGGCATCTCCTCGTCCTCAGTCAACAGAAAAGGTTGGTTTAAAATATGAAAGTGGTCTTTTTCTTTCAGCATCCTGCATGGATAACTGCATTTATCTGTATAGCATCCTTCAACTTGACAAGGGGCCTTTCAGATCTTTTCCTGGTTGTCCCATAGAATCATTTTTTGTCAAGGCTGCCATTAGCCCAGATGCGTCTCAAATAGTCAGCGGTTCTAGTAATGGAAATGCCTATGTCTGGCAGGTTAACAAGCCCCAAGCGACGCCTGTTATTTTGAAAAGTCATGATGCGGAGGTTACAGCAGTTGACTGGAACCACTCTGAGATTGGTAAATTAGCAACGACATCAGATGATTGCACAGTTCGGATTTGGAACCAAACCAATTATATCTGCGACAAAAAGACTTCATGTTCCATCCGCAGAAGAGTAATGGCAATGCCTTGTACAGAAAGCAAAATTCTACTGAACAATGAAGAAAAGTATCTCAAGTCAATAGACAATGAATCATTAGATCCCCCAATTAAGTTAGCCACTCCAATCACTCCACCTAAAATTCTTGCACCTGAAGGGTGGCACAAGAACAAGCTGCCCTCAGGATTCAATCAAACTTCATCATCTGAAAAGACTCCAGAATCTGCTTTGAAGAGCCCCTCATCTTTGCACAGTGGCAAGAGTGGTTTGGAATTCATCAAATCATATTTTTTTGGTTATACGAAATGTAAATTGCTTAAAAGGGTTAAAGATTGGTGCCCTACTAAACTATATGAACCTAAGCCTAGGTTGCTTGGTAGGTGCATCACAATCCCTGATCCCGGGATTTTGAAACTAGTTTTGATTTATCTTGTTGGCAGTGATCATTTCATGAATAGCAAGATTGGTAGATGA 1659 0.4201 MDVTKRSSVFTQIASRELNSFRVRKRPYMDGFVTGFVEHGAVGVHHSEDGTIPMSLSFCKTPKYSHILALSDEDGYLTLFDSRKKFSVLSSFEENAEKAKICEWVSHLNAVFDICWIKEDTQILTASGDQTMKVWDVQEKKCIGVLTGHTGSVKSMCAHPNNADIIVSGSRDGSFCLWDLRCKSATRGRHGEVSICSTAVVKGAHLSSQAKRVRKGKAKSMSITSVLCLKDQVSIATAGAVDSVLKFWDTRNLKSFVTQASPRPQSTEKVGLKYESGLFLSASCMDNCIYLYSILQLDKGPFRSFPGCPIESFFVKAAISPDASQIVSGSSNGNAYVWQVNKPQATPVILKSHDAEVTAVDWNHSEIGKLATTSDDCTVRIWNQTNYICDKKTSCSIRRRVMAMPCTESKILLNNEEKYLKSIDNESLDPPIKLATPITPPKILAPEGWHKNKLPSGFNQTSSSEKTPESALKSPSSLHSGKSGLEFIKSYFFGYTKCKLLKRVKDWCPTKLYEPKPRLLGRCITIPDPGILKLVLIYLVGSDHFMNSKIGR 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g02315 552 Gene3D - 42 185 IPR015943 GO:0005515
Adu05g02315 552 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Adu05g02315 552 Pfam WD domain, G-beta repeat 105 136 IPR001680 GO:0005515
Adu05g02315 552 Pfam WD domain, G-beta repeat 349 383 IPR001680 GO:0005515
Adu05g02315 552 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Adu05g02315 552 ProSiteProfiles Trp-Asp (WD) repeats profile. 350 383 IPR001680 GO:0005515
Adu05g02315 552 SUPERFAMILY WD40 repeat-like 64 394 IPR036322 GO:0005515
Adu05g02315 552 Gene3D - 186 417 IPR015943 GO:0005515
Adu05g02315 552 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Adu05g02315 552 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Adu05g02315 552 PRINTS G protein beta WD-40 repeat signature 370 384 IPR020472 -
Adu05g02315 552 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Adu05g02315 552 SMART WD40_4 139 179 IPR001680 GO:0005515
Adu05g02315 552 SMART WD40_4 298 339 IPR001680 GO:0005515
Adu05g02315 552 SMART WD40_4 343 383 IPR001680 GO:0005515
Adu05g02315 552 SMART WD40_4 97 136 IPR001680 GO:0005515
Adu05g02315 552 SMART WD40_4 209 249 IPR001680 GO:0005515
Adu05g02315 552 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Adu05g02315 552 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 350 383 - -
Adu05g02315 552 MobiDBLite consensus disorder prediction 455 480 - -
Adu05g02315 552 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 181 IPR001680 GO:0005515
Adu05g02315 552 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Adu05g02315 552 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 2 483 - -
Adu05g02315 552 PANTHER BNAA06G31940D PROTEIN 2 483 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g02315 107 338 U-box Gene Family AT1G04510 24.803 2.54e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g02315 K11790 - gmx:100819114 659.833