LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu05g02309	ATGGAGAAAGTGGTTGTGGAAAACCTTTGGAATGGTGACAGAGATGCACAAATTCAAGCAGCTATGGAGCTAAGTAGATTTAGTAGTAAGCAAAGGCACAAGTTGGAAGAAAGTGGAGTCTTGGTTCCTCTGGTTTCCATGCTTCATTCTGAAGACTATGAAGCCATTGAAGCTTCTCTCTGTGCTCTACTCAGTCTTGCATTCGGCAGCGAACGAAACAAGAGAAGGATCATCAAGTGTGGAGCTTTGCCAGTTCTGCTGAATCACCTTCACTCTCAAAGCCAAACAGTGGTGCAATTGACAGTAGCAGCCATGCTAACCCTCTCATCCTGCAAGGCAAATAAGGTTGCAATTGCTTCATCCGGTGCTCTACAACACTTGGCTGAATTTGTAAATAGCGGTGACATTCAGTTACAGCTTGATGTTGTGGCCACAATCCACAACCTCTCAACCTGCGAAGAGATTGTTCCATTGATCGTTGCTTCTGGCATTATACTTTCATTGATTGAACTGGTCCACAACTCTGTGAAATCATCTCCGCTGGGTGAAAAGGCGATTGGTTTGCTCGAAAATATTGTCTCTTCATCAGAGAGTGCACTTTGTGAGGCTGCTAGTGTTGGTGGGGCAATTCGGATACTGGTCGAGACTATTGAAGATGGATCATCACTAGGGTTAAGCATAGATGGAACGCGGAGAGCCAAGAACATGGCTCGAGAACTGTTGTTGCTTCTGAGGGATTACTCCGATTATAGTTCAAGACAAAAACAAATGAATCATGAGCTCATAGAGCGGATCATGGAAGAAATTGATGCAGATGGAGAGAAATTGGCTGATGCTAAGCTGCGTTTAGTGGAGGAGATGATTGCAAAGCTGAACACATAA	882	0.4433	MEKVVVENLWNGDRDAQIQAAMELSRFSSKQRHKLEESGVLVPLVSMLHSEDYEAIEASLCALLSLAFGSERNKRRIIKCGALPVLLNHLHSQSQTVVQLTVAAMLTLSSCKANKVAIASSGALQHLAEFVNSGDIQLQLDVVATIHNLSTCEEIVPLIVASGIILSLIELVHNSVKSSPLGEKAIGLLENIVSSSESALCEAASVGGAIRILVETIEDGSSLGLSIDGTRRAKNMARELLLLLRDYSDYSSRQKQMNHELIERIMEEIDADGEKLADAKLRLVEEMIAKLNT	293

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu05g02309	293	Pfam	Armadillo/beta-catenin-like repeat	113	150	IPR000225	GO:0005515
	Adu05g02309	293	Pfam	Armadillo/beta-catenin-like repeat	71	105	IPR000225	GO:0005515
	Adu05g02309	293	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	81	123	IPR000225	GO:0005515
	Adu05g02309	293	PANTHER	U BOX DOMAIN-CONTAINING	1	222	-	-
	Adu05g02309	293	PANTHER	U BOX DOMAIN-CONTAINING	223	273	-	-
	Adu05g02309	293	PANTHER	ARM REPEAT SUPERFAMILY PROTEIN	223	273	-	-
	Adu05g02309	293	PANTHER	ARM REPEAT SUPERFAMILY PROTEIN	1	222	-	-
	Adu05g02309	293	Gene3D	-	3	257	IPR011989	-
	Adu05g02309	293	SMART	arm_5	70	110	IPR000225	GO:0005515
	Adu05g02309	293	SMART	arm_5	111	151	IPR000225	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu05g02309	Adu-Chr5	86361814	86363252	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu05g02309	3	224	U-box Gene Family	AT2G23140	31.111	1.02e-18	84.3

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu05g02309	-		-	gmx:100778534	404.445

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