Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g02284 ATGAAACTGAATTTTTATATTGATTATCTTTTGTTCCAAGATGATATCTGTCTTGGAATGAAGACAAACCAAATACCAACACAAATAGTGCCACATGCATATGACTCAGCCTTTGCCTCTCTTCAATTCCAATATCAATGGCCTTTAGCCTTTGAAGGATTTCCAGAAGATAGAGCTGCAAGTGCTTCTAAGAGCCATAGCCAAGCAGAGAAAAGAAGAAGGGAAAAGATCAATGCACAGCTTGCAACTCTTAGAAAACTGATTCCTAAGTCTGATAAGATGGACAAGGCTGCATTACTAGGGAGTGTAGTAGATCATGTGAAGGATCTAAAGCGAAAAGCGATGGATGTGAGTAAAAGCATCACAGTTCCAAGTAAAACTGATGAAGTAACAATAATAGAGTGTGACCCTGATCAAGATGAAAGCTATGCTAAAGTGAAGATACTGAAGCACAACATTGTAATTTCAGTTTGCTGCGATGATAGACCAGAACTTTTCAATGAACTCATTCAAGTCCTAAAACGGTTGCGGCTCATAAATCAAGATCAAAACATATTCAGAAGCAGCAAAACAGAAGCAGCAAAACATACTCAAAATAAAAAATATCAAAAAATCAGAATCCAAAATCAAGAAGGCAGCATAGAACAGGCGAGCTCACAGAACCTCAAAAAATCAAAATCTAAAATCAAGAAGGCAGCATAG 702 0.3718 MKLNFYIDYLLFQDDICLGMKTNQIPTQIVPHAYDSAFASLQFQYQWPLAFEGFPEDRAASASKSHSQAEKRRREKINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKRKAMDVSKSITVPSKTDEVTIIECDPDQDESYAKVKILKHNIVISVCCDDRPELFNELIQVLKRLRLINQDQNIFRSSKTEAAKHTQNKKYQKIRIQNQEGSIEQASSQNLKKSKSKIKKAA 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g02284 233 Gene3D - 56 119 IPR036638 GO:0046983
Adu05g02284 233 CDD ACT_UUR-ACR-like 154 188 - -
Adu05g02284 233 PANTHER TRANSCRIPTION FACTOR BHLH30 36 179 IPR045847 GO:0003700|GO:0006355
Adu05g02284 233 PANTHER TRANSCRIPTION FACTOR BHLH51 36 179 - -
Adu05g02284 233 SMART finulus 67 116 IPR011598 GO:0046983
Adu05g02284 233 MobiDBLite consensus disorder prediction 208 233 - -
Adu05g02284 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 114 IPR036638 GO:0046983
Adu05g02284 233 MobiDBLite consensus disorder prediction 208 223 - -
Adu05g02284 233 CDD bHLH_AtAIG1_like 56 133 - -
Adu05g02284 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 110 IPR011598 GO:0046983
Adu05g02284 233 Pfam Helix-loop-helix DNA-binding domain 64 110 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g02284 Adu-Chr5 85966709 85968358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g02284 50 178 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 43.165 3.88e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu05g02284 HLH 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g02284 - - adu:107459448 317.39